Array 1 568319-567247 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI519499.1 Derxia gummosa DSM 723 H566DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 568318 29 100.0 33 ............................. AAGGCGCCTCCGCCTCCGCCGCCGATCAATGAG 568256 29 96.6 33 ...................A......... TTCGGGGCGGGGGCGGATTGTGCGGCGGCCGGC 568194 29 100.0 32 ............................. CTCGACGACATCGCCGAGAGCCTCGCCAAGCT 568133 29 93.1 33 ........T...................A GGGACCGACCGGGCGGGCGGGTATCGCGCGCTC 568071 29 100.0 33 ............................. CCCGGGCTGATGCAGGTGTGGGCCGCCTATGGC 568009 29 100.0 33 ............................. ATCCTTCCACGCCCGCTCGATCGCGCCGAAATC 567947 29 100.0 32 ............................. GGCGTGCTCGCGCTCGCGGCCTTTTTCGGCGC 567886 29 100.0 32 ............................. GACGGCGGCAACTGGTTCGCGCACGTCGAGGA 567825 29 100.0 32 ............................. TGGCCCTTCGGGAAGGCCTGCGCGGCCGGGCT 567764 29 100.0 32 ............................. GTGATCGGCCAGAAGCAGGCGCTGAGGTCGGC 567703 29 100.0 32 ............................. CTTGGGACGTCGGTCTGGACGGGATTCTGGGA 567642 29 100.0 32 ............................. AACCACCGACGGCTGCAGCAATCGCCAGTGCT 567581 29 100.0 32 ............................. GTGATCGGCCAGAAGCAGGCGCTGAGGTCGGC 567520 29 100.0 32 ............................. CTTGGGACGTCGGTCTGGACGGGATTCTGGGA 567459 29 100.0 32 ............................. AACCACCGACGGCTGCAGCAATCGCCAGTGCT 567398 29 100.0 33 ............................. CTCTGGAAGCACTGCGCGGAGACGGGCGACACC 567336 29 89.7 32 ............A..A............A GCGCCGCTCGACGCCATGTCGCGCCTGCTGTC 567275 29 79.3 0 .....T.....A...A..A........AC | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.7 32 GCGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGCGTTCCCCACGGGCGTGGGGATGAACCGTCGATCGGCTACCTCAGCACCCAGAAGGCCACG # Right flank : CCCACCGCGCGATTCGACCCCGTTCCTCCCTTGCGCCCCCAAGCACATGGCGATGACCTGCGCGCCAACTCCGTCAAGCAGCCCGCGCACAGGCATTCCCACGAGCAGAGCGACGACCCGCTGGTCTCCGGGAGACCGACTCGCCTACCTCCTCACCGCACCGTCGCCAGATACGCGATCAGATCCGCCCGATCCTTCGCCTCCGCCATGCCGTCGTACTTCATCTTCCCGCCCGGCACGGCCTGCTTCGGCGCCTTGAGATAGGCGTCGAGCTGTTCGGGCGTCCAGGTGATGCCGCTGGCCTTGAGCGCGTCGGAGTACGAGAAATCACCGATCTGCCCGGCCTTGCGGCCGACGCTCGCGAACAGCGACGGCCCCTTCTTGTTGCGGCCTTCCTTGAGGCTGTGGCACTCGGCGCAATGCTCCGAGAACAGGTCGGCGCCGAGCTTGGCATCGCCGGCAGCGAGGGCGGGCGTGGCGATCGCGGCGCCGAGCAGCAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 582050-581838 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI519499.1 Derxia gummosa DSM 723 H566DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 582049 29 100.0 32 ............................. GCGAATGATGTTCTTCAGCTTCATTTCCAATT 581988 29 100.0 32 ............................. TCGTTGGGCTAGGCGTCGTCGTGATTCGTGCG 581927 29 100.0 32 ............................. ACGCCTGAGCACTGGTCCCGTTATTCGAATTA 581866 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : AAAGAAAGCGCTGCTGGGCTGGCTGCGCGTGATCGGCACCGACCACGGCGGCAGCGCGCACGGCGCGTTCACCATCGACTTCTTCATCGACATCACCGACATGGCCAGCGTCTGGGAGCCGGTCGGCCGCAACCTCTACCGACTGCACGAGCGCGCGACCGAGGCCGTCAGGTGGACCGCGACCCGCGTCGATCTCGTGTTCGGCTCGAACCGGTGCTGCGCCCCTATGCTCAGGATGACGGCCACGAGAGGCTCGTGTGCGGCGACTTCGCGGCGGCGTGGACGAAGGTGATGTAGGCGGATCGGTTCGATCTGAGGTGAGAGTGGGGCGGGCGGCTTGGCTGCCCGTCGGCGGGATCGCGTGGTGACATGCCCAGCGGTTGCGAGGTCATGCACACGATGCTTCCCGCGAGTCATATCACGATGAATTTTCATAAGAATTTGTCGGTGGAAAAAGATGATGGGAATTGTTCTTTAAGAATCAAGTGGTTATGGTTGGT # Right flank : ATGCAGTTCAGTGGTGAAGACGGCACGCGGTTGTGTTCCCCACGGGCGTGGGGATGAACCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 805083-803454 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXWS01000007.1 Derxia gummosa DSM 723 H566DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 805082 37 100.0 35 ..................................... ATGGAGGCCCGCATGGGTGCCAACACCACCGACGA 805010 37 100.0 37 ..................................... GAGGGTCGAGCTGCCGCGCTCGGTGTCGATCACCGCG 804936 37 100.0 35 ..................................... CGCGTCGCGAACGACGACGCGACCGAATGGGCCGA 804864 37 100.0 35 ..................................... CCGGCGACGTACCTCGACATCTCCGTTGTCGCGTC 804792 37 100.0 36 ..................................... ACGTACCGGCTGTGCGTCACGCGCGACTCGGCCAAC 804719 37 100.0 35 ..................................... AATGCGCTGGTGGTGGACGCGTAGCAGGTCGAGCG 804647 37 100.0 34 ..................................... CCGGCAGCGATGCCCACACGCGCGCGCATCGCTC 804576 37 97.3 36 .........................A........... AACAGCATGCGCGACGAGGTGCCCCAGTTGCGCGAG 804503 37 97.3 34 .............T....................... GTCCATGCGTTGGTCTGCTTCACCACGCCCACGA 804432 37 97.3 34 .............T....................... AGGGTTTCGAGCAGCAGCACGAGGTCGTCGATTT 804361 37 94.6 36 ..............A..........A........... ACAATCATCGGCCGGGTGCTGTGGGTCTGGCGCGGC 804288 37 94.6 34 ......G.......A...................... TGGTGATTGCGGTCCTGCCGCGTGAGCACCTCGT 804217 37 97.3 36 ..............A...................... ACCAGCCCAGGCAGGAAAGCTAGGAACGCGATCGGG 804144 37 97.3 34 ..............A...................... TCGCGTCGATCGACGCTCAGGTACGCCCGCATGC 804073 37 100.0 36 ..................................... TGCGATGGGGTCGGTGGCACAGACGTGATTGCCGCA 804000 37 97.3 35 ......G.............................. CTTGCGCACGTTGTCCCAGTGCTTGAGCCGGCGCG 803928 37 94.6 36 ..............A.................C.... GTGCGTCTCGCCGGGCTGCAATCGCGCCTCGCCGGG 803855 37 100.0 37 ..................................... CGGACCAAGGTGCTGGGCGACCTCGAAAAGGCACACA 803781 37 97.3 35 .........................A........... TTGTAAACGAGAACGGCGGCAGTCGCGAGCGCGGC 803709 37 97.3 37 ..............................C...... CGCAGGGCGAGGTAATCGCGGGCCTGCTCGGCAGACA 803635 37 100.0 35 ..................................... ACGTGGTGGATTGACGGATTACCGAAAGACAATGG 803563 37 94.6 36 ......G.......A...................... GTGAACGTGGTGCCGCCCAGCGTCAGCATGATGCCG 803490 37 83.8 0 ..............AG.C..C......C.A....... | ========== ====== ====== ====== ===================================== ===================================== ================== 23 37 97.4 35 GCTGAATTCACTCCGAATGGAGTGACTTCGTTGAAGC # Left flank : GCCTATCTCGACGCAGCCCGCGAGTGGGTGACGGTCACGCCGATGGTGCTGCCTGGCGATTTCGGCGGTGGCGATCTGCGCGTCATGACCAAGCTGCTGCACAAGGCGCTGCGCGAATCGGGCATCGATCCGGGGCTGCTGGCGGGGGCCGAGTTTTCTCGGCAGCCGCTGATCCGGCAGGCGCCCGCGCTGCGCGAAGTGAGGCTCAAGCGCTGGCAGGCGCGCAGCCTGATCCTGTATCACCTGCGGCTGCGCTTTCGGGAGCCGGTGCGCGGGCCGCTCGTGCTCGGGCGCGGGCGGCACTACGGCCTCGGGCTGTTTTGCGCGAACCCCAAGTGAACGGCAGTTCTCTAGTAGGTTCGCGCGCTCTTTAACAAGCTGATTTCAAAGGGAAATGCGGCCGGGTGACGGCGGCCGCGATGGCTCCGCAGCCCCGATACCCGGCGGTTCGCGCAAGTGGCGCGAAAACCGTCGGGGAATCAGGTGGTTGCAAGTGAGGA # Right flank : CTTGCCAACATCTTTGGCCTTTCATTCGCGGTATCCACCCAATTCGCCCTCCGGGGCGACTTCATTCCTCCGGTGAATCCCGCGAAACCCGCGCTGTCAGCCCACTCCCACACCCCCACGCGCCCCCCAGCGCTATCCCGCCAACCACTGTCCGCAGCCCAATACCCCCTCGCCGCCAACATCCGAGGGACGCTGCATGGACCGCCTGCACGACCACCGCCCGCCGCCTGCCGCCGCGCTGCGCCAGTCCGACCCGCCCGCCACCCGCGCCCCGGCCATCGCAGCTTCCGACGCCACCGTCGTGCCCGGCGCCGCCACCGCCGCCGACCCGCTCTGGTACAAGGACGCGGTCATCTACCAGCTCCACGTCAAGTCCTTCTTCGACGCCAACAACGACGGCGTCGGCGACTTCGCGGGGCTGATCGCGCGGCTCGACTACATCGCCTCGCTCGGCGTCACCGCCATCTGGCTGCTGCCCTTCTATCCGTCGCCGCGCCGCG # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAATTCACTCCGAATGGAGTGACTTCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.70,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //