Array 1 2229194-2228822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072875.1 Azospira inquinata strain Azo-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 2229193 37 100.0 30 ..................................... TGTCGCCCCAGGGGCTACGCAACGGGAAGC 2229126 37 100.0 30 ..................................... TGGAATGTCTACAATCTTATATTCCGGAGG 2229059 37 100.0 30 ..................................... CAACAGGCCGCCGCAGCTTCCGGGGAAACC 2228992 37 100.0 30 ..................................... TGCCCCGCCGATGGTAATGGTGGCGTTTAG 2228925 37 100.0 30 ..................................... GATGCGGTCGCCGCTGGCGTCGAAATTCAA 2228858 37 89.2 0 ...........................A..TC....T | ========== ====== ====== ====== ===================================== ============================== ================== 6 37 98.2 30 GATTGTAGCTTTCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : GATGATGCGACCCACGAAGCAGTCGCGATTGTTCCGGAACGTGCCATCGGCGGCATGCAATTGACCAGAGTGCTTGATCAGTTGGCCGAGACGCGAGGATTGCCCAAGGCGATTCGGACCGATAACGGCAAAGAATTCTGTAGTCGAGCCATGCTGACTTGGGCTCATGCACGGGACGTTCAGCTCTTCCTCATTGAACCTGGAAAGCCCAACCAGAACGCCTACATCGAATCGTTCAATGGACGCTTCCGGGACGAATGTTTGAACGAGCATTGGTTCACCAGCCTACGCCATGCTCAGGTCGTTATCGAAGGCTGGCGCCGAGAATACAACGAGGAGCGACCCAAAAAGTCCCTGGGCCGTTTGACGCCTGCGGCTTATGCCAAATCACTTACCCAGAAATCGGGTAAATTACCCCCGGACTCTAAAGCCCTCTGCTACTGAAAACGGGGGAACGTCGGAGCTACAACGTCTCTTGTTGATGAACTAACTAGCAAAAC # Right flank : CAAAGGTAAGAAAATATAAGGCAAAAGAAAAGCTCCACTCCCTCCTCACCCCCGTCCCCAAAGAATCATCTGGGTACAACGAAACAACGCAATACGGCGGCCGGTGATTTCGTCGCTGACCACCCCGTCCCAGACCTGGGTGGTTTTGCCCAGGTGCTGGGGGGTGGCGACGCATCGGATGGCGCCTTCTCGGCAGGTGCCCAGGTGGTTGCTCTTCAGTTCAATGGTGGTGAAGGATTCCGCCCCCTCGGGCAGGTGGGCCATGGTGGCGTAGCCGCAGGTGGTATCCGCCAGGGCCACGATGCTGGCGGCGTGGAGGAACTGGTTCGGGGCAAAGTGCCGGGGCTGAAGCACCATGCGGGCACTCAGCCGCCCCTCGCTCAGATCCGTTAGCTCAACGCCCAAATAACCGGGCAGGTAATCCGTACCGATTTGATTCAGGTGATCCAGGGTCACGTCTGCCCGCAATTTGGTCATGGGCTTGTCTCCTTATTTTAGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTGTAGCTTTCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 2232078-2230432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072875.1 Azospira inquinata strain Azo-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 2232077 37 100.0 30 ..................................... AGCCGTAGGCGCACAGCAGCACCAGGACGC 2232010 37 100.0 30 ..................................... GGACTACGGACTCGCTGCTCATTTGGGGAC 2231943 37 100.0 30 ..................................... CCTCGATATGGTGGTGGTGGACAACTGTTC 2231876 37 100.0 30 ..................................... ACCCGTCCTTGTCAGGCCGGGTCCAGGTGA 2231809 37 100.0 30 ..................................... TGCTGCCGTATTGGGGGTGATCGGTCTTGT 2231742 37 100.0 30 ..................................... GCTCAAAGCCTAGGTTCGTCGGATAAATAT 2231675 37 100.0 30 ..................................... CAATAGATCGGAGGGAGAAAATGGAAAATC 2231608 37 100.0 30 ..................................... CCTCTCTAGCCAGATTCTGGACAAGAACAT 2231541 37 100.0 30 ..................................... AATTTTTCCGCGAAGGGTTCTTGTTTTTTC 2231474 37 100.0 30 ..................................... GGTGCTGGCGTACTGCCCACCAAGAATATC 2231407 37 100.0 30 ..................................... CCACTTATTGAATGGCATATGCCCTAGCTG 2231340 37 100.0 30 ..................................... CAGCGTGGCACCGTCCTTGTCACGCTCTCC 2231273 37 100.0 30 ..................................... CACGTAGATGGAGAGGCCGCCGTAGAGGGC 2231206 37 100.0 30 ..................................... TCGGTGCGGTCTGCTATATCGGAGGACCAG 2231139 37 100.0 30 ..................................... CAATTCGATCACGTAGCGGATCATGGGTTA 2231072 37 100.0 30 ..................................... CGGATCAAACATATCCTCCACCCCAACGCC 2231005 37 100.0 30 ..................................... CACGTAGATGGAGAGGCCGCCGTAGAGGGC 2230938 37 100.0 30 ..................................... TCGGTGCGGTCTGCTATATCGGAGGACCAG 2230871 37 100.0 30 ..................................... CAATTCGATCACGTAGCGGATCATGGGTTA 2230804 37 100.0 30 ..................................... CGGATCAAACATATCCTCCACCCCAACGCC 2230737 37 100.0 30 ..................................... CCGTCACCGTGTCACCCGCATGGATGCGGC 2230670 37 100.0 30 ..................................... CACCTTCACGAGTCGGGTATCGATCCCGTT 2230603 37 100.0 30 ..................................... TCGGCTGCCCGTTGGAGCGCTGACGAAAAA 2230536 37 100.0 30 ..................................... CTGGGACTGCTTCTGGATGTATCCGCCTTC 2230469 37 91.9 0 ...............................C..GT. | G [2230434] ========== ====== ====== ====== ===================================== ============================== ================== 25 37 99.7 30 GATTGTAGCTTTCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : AATACACGGTCGAGAGCCTTGCCCGGCTATTCGAGGAAGGCAACAGCGAACTCGAACTTCCAGCCTTAATCGGATTGCAAGCTCACCGGCTGGAATGCTAAGGCATGGGACAGGAGACACGACGCTTTATGCGACTCATCGTCTTCTTTGATCTACCCATGGTCACCAAGATAGAGAAACGCGCCTACGTTCAGTTTCGCCGCTTTCTGCTCAACGATGGCTACGACATGATCCAATGGTCAGTCTACGCCCGCTTGCTAAACGGTAGTGATGACCATGAAAAACACCTCAAACGCCTGATCGACAGCCTCCCGCCCGCTGGCTCAATCCGATGCATGACCGTCACGGAAAAGCAATTCGCTGGCATTCGCCTGCTGGTCGGCATGCCACTTTTTCAGGAAAAAAAGGTTCCAGCAAATCAAATGCTGCTGTTTTAATAAACTTTTTCACAAAAAAAAAATCCCTCCCAGCTACACCAGGAGGGATTTTCACTTCGGTCT # Right flank : CCCCCGGAATTGAGTAGCACCTGACTTTAGAGTCCAATCTTTCAAGACAAGGAGATTGGACATGAAGAAGCGATTCACCGAAGAACAGATCATTGGGTTCCTGCGGGAAGCGGAGGCAGGGATGCCGGTGGCGGAGTTGTGCCGTAAGCACGCTTTCTCCGAAGCGAGTTACTACCTCTGGCGCAGCAAGTTTGGCGGCATGAGCGTGTCGGACGCCAAGCGGCTCAAGGAACTTGAAACGGAGAACACGCGCTTGAAGAGGCTGCTAGCCGAAACGATGCTGGAAAATGAGATCGCTAAGGAAGCCCTGCGAAAAAAGTGGTAAGCGCACCGTCACGACGTGATCTGGTGCGCTATCTAATCGACAGGGGACTCAGCGAGCGAAAGTCGTTGCGTTTTGTTGGCATGAGTCCGAGTTCATTCCGTTACCAACCAGCGACGGATCGCAATGCTGCTTTGAAGGAGAAGATTGTTATGCTCGCCCAACGTCATCGGCGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTGTAGCTTTCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 2969960-2970589 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072875.1 Azospira inquinata strain Azo-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2969960 28 100.0 32 ............................ ACCGTCCATGTCACCCAGCAGCCGGGGCAGGA 2970020 28 100.0 33 ............................ AATGCGCGGAGTTTCTCCAGATACGTACTGCAT 2970081 28 100.0 31 ............................ TACCGCCTAACTCGCCCCCCCCCTCACCTAA 2970140 28 100.0 32 ............................ GGCTGGCGGCGGGCCCATCCGGTAAGTTCCTG 2970200 28 100.0 32 ............................ AGTAGGCGGTCCCCAATAGCCAGGGAGTAGAT 2970260 28 100.0 33 ............................ GTTTTGGCTTCCGGCGGGGCCTTAGTTTCCGTT 2970321 28 100.0 32 ............................ AAGCGCATCCCCTACGTTCAAAACGTGATGTA 2970381 28 100.0 32 ............................ TTACGGGGGCGGGTCGTGCTGGTGGCCGGTGC 2970441 28 100.0 33 ............................ TCCTCGGGAGACGAAAATGCACATCGAATACGC 2970502 28 100.0 32 ............................ TCAACAAGGCGGGGACGTACGAGCGAATAAAA 2970562 28 89.3 0 .......................CCC.. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AACTGGAGCGGCTCATGGCCACCCCCTGGCTGCGGGGCATGGAAGACTACCTGGAGCGGAGCCCCATCCACCCCGCCCCGGCCAATGCCCAATACCGGGTCGTTAGCCGGGTCCAGGCCAAGAGCAATGCGGACCGCCTGCGCCGCCGGGCCATGAAACGCCACGGCCTGGCCGAGGCGGAAGCTGCCGCCCGCATTCCCCTGGCAGCGGAAGAACGGCTGGACCTGCCCTTTGTCACCCTGGGCAGCCGCAGCACCGGCCAACCCGCTTTCCCCCTCTTCATCCGCCACGGCCCCCTGGTGCCCTCCCCCCAAACCGGGGACTTCAACAGCTACGGCCTAAGCCCCAAAGCCACCGTCCCCTGGTTTTGACCCTTTTTTTTCGCTCTTTAAAAAACCGATAAAAATCAGTCCATTGCCCGCCACCCCCAAAAAAGGGGTGGCGCGGGCAATTTCACATTTTTTGTTTTTATATCAATGGATTGGGGAATATTCTGTCTA # Right flank : ACCGCCCCCCTTCACTTGATAAAAACACTCGAAAAATCCGTTACTTCCCCCCTTTTTCGTGGCCTGCTTCATGGCCCGACTGCCTATAATTTGGGATATTCTCTGACCAAAGTATGGCGTAGGATGCCCAAGCCCTTTTCCGGGCTTTTTTCATAAAACTTAAAACGGCTTCCCAGTACCCACCCTTTCAGGATTCCCCATGGATACCCCCGCCACAGAAGATAAAACCGGCGACGCCCTCAAGGCTCAGCGCTTCCAGATGCTGGAAGACATAGCCAAAGAATTGGAAGGGGATGTGGTTTTCCCCACCTGCTTTGATGTCACCCTGCGCCTGCGTAAGGTCCTCAACGATCCGGACATTTCCCTCCCCCGCCTGGTGGCCGTTCTCAGCGCCGAGCCCCTGATCAGCAGCAAAATTCTCCATCTGGCTAATTCGGTGGCCTACAACCCCCAGGGTCTGCAATGCCGGGATTTAATGGCGGCTATTCAGCGCATCGGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3163733-3164481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072875.1 Azospira inquinata strain Azo-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3163733 28 100.0 32 ............................ AACAGCGGGGACGATCTTGTCACCCCAAACCA 3163793 28 100.0 32 ............................ ATTTGGCCCATTTCCTTTAATGCCGTTTGAAT 3163853 28 100.0 32 ............................ TTTCACAATCTTGGCCGCCGCCTCGGCTTGCA 3163913 28 100.0 32 ............................ ACAGGATCATCGTGAGCCTGTCGATCACCCAC 3163973 28 100.0 32 ............................ TTGTCGGCTCCGGCGCTTCGTGTTCGTTCCGG 3164033 28 100.0 32 ............................ AAAAGGTTGTTAAATCATCCGAAAGCCACATA 3164093 28 100.0 32 ............................ ATGCTGGTAGTGATGTCGGGTTAGAGCCCATT 3164153 28 100.0 32 ............................ CCGACGAAGTGGAAACGGTCCATGGGCCTGAC 3164213 28 100.0 32 ............................ TTTTTGGGGTGCGCGGGGGGGCTTGGCGTCGA 3164273 28 100.0 32 ............................ TGCCTGAAGACCGGTGGGACATCCACCTCGAC 3164333 28 100.0 32 ............................ TTGGAGGCCCGCTTGATCCGCCTCACCGCCAA 3164393 28 100.0 32 ............................ TGGCGCTCGGCGACGGTGTAGTCGTTAGCCGA 3164453 28 82.1 0 .............C.........CT.GC | C [3164473] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCCCGGGGGAGTGAACGGGGCAGACAAAAGTCTTTGCGTGGCGCGGGAACTGAAGGAAAGCTTCGCTGCCCTCCAGGCCCATAATCCCCACTCCTACCCCCTCTTCTTCCCCGGGGTACCGGACGGAGAACCCAGCTGCATCCCCTTCCGCCCCGCCGTGGAAGGCAAGGAAAGCGGCTACGGCGGCCTGCCCAGCCCCACGGACCGGGACGGGGACGGGGTCCCGGACGACCAGGACAACTGCCCCGCCCTCTTCAACCCCATCCGGCCCATGGATAACGGCGTCCAGGCGGACTGCAACCACAACGGCATCGGCGACGCCTGCGACCCTACCCCCTGCCCCTGATCCCTCCCCGGGGATGGCAGACCCTTTTTTTCCCCGTCTGCCCACCCCCAGCAAACACGGGCCTTCCCAGCCCCCCGGAAAAAAAGGGTCCAACCAGGGGAAATAGGGGAAAGGCCTTTATAATCGGGACACTGGAGGGAAAACCCTCTA # Right flank : CGTCTGGCCAGATACCAGAGGCGGCCCAGCCATTCGTGGAGGGCCAGGCGGGAGTATTCCAGGCCCCGGGGCTGGGGCAGGAAATCCAGGGGGGTATGGGGATGGGGGGTGAAGCCGGTGGGCGCCGGAATGGCCTTGAGGCCGGCCCGTTCAAAGGCGGCCTGGGCCCGGGGCAGGTGCCAGCCGTGGCTCACCAGCAGCACCGTGCCGATATGGTCCCGGGCCAGGAGAACCGCCGCGTTGTTGGCGTTTTCCCGGGTGCTCCGGGCTCCGTCTTCTTCCCAGCGCACCCAGGCGCCGAAATCGTCTTCCAGGGCCCGGTTCATGAGGCGCCCTTCCGCTTCCTTGCCCCCGTCGGGCCGTCCGCCGGTGACCAGGATGGGCAGGCCGGTCTGGCGCTGAAGCCAGGCGGCGTAGCGGAGCCGTTGCAGGGTTTCCCGGGAGACGGTTTCGCCGCCGTATTCGGGGGCCACCAAATCCCGACCGCCCCCCAGCACCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //