Array 1 7787-8880 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORY01000178.1 Paenibacillus dendritiformis strain J6TS7 sequence178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 7787 32 100.0 34 ................................ GATACGTTATATGAAGCGCTGGAACATCTGTATG 7853 32 100.0 33 ................................ CGAATATGTATTTTTCTCTATTATACACCTGCC 7918 32 100.0 34 ................................ TCAGGTTGATCCAAAGGTTGATCCGGGATCAAAA 7984 32 100.0 34 ................................ ACATTGGCGGCAGCCGCGGCCGCGGCCACCCATG 8050 32 100.0 33 ................................ AATTCCCTACCTCCCCCCGATCATGTCCATTCC 8115 32 100.0 34 ................................ TGGGAATTTTGCGCGGGAGCTCCCCGACCGATAG 8181 32 100.0 36 ................................ GTAAAAGGTAGGGAAGGTAGGGGGAGTGTTTATGTC 8249 32 100.0 34 ................................ CCGGCTTCCCCGCCGATCGGTTCACTCCGGAACG 8315 32 100.0 34 ................................ TTCTGGCAGTATCGGTCACTATCGGACTTGTTGC 8381 32 100.0 34 ................................ ATCCTCACCAGCTTCAGGCGGGACAGTCTCAGGC 8447 32 100.0 34 ................................ AGGATAAGCAAAGAGAGCTACTAGATCACCGCAC 8513 32 100.0 34 ................................ ACCTGCACGCGGAAATGCTCACCATTGCGCGGGT 8579 32 100.0 35 ................................ AGTTCGAAACCATAGCCTGCCCGAGTAACCTCATT 8646 32 100.0 36 ................................ TTTGATAGCTTTTCGATTCTCCATTATTTCTACCCT 8714 32 100.0 37 ................................ CGTCTTTTGACGTTGGCGGCGTTGTTCCAGGGCCGAC 8783 32 100.0 34 ................................ TTCGCGCGTGTTGTCGATCTGCTCTTTTAGCTCC 8849 32 84.4 0 .......................C..AC.T.G | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ACAGGAAGCGATATGACGTATCGTGGCGGTGATGTACCGTGTTGTGTTCATCAGTTTCCGTCCCCATACAAGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGCGGTGGGGAACAGGGGGAATAGACGAGTCTATGCTGTCATACCTATTCCACTGGAGTTTCTGACTTGGTGGATTCATTTTTCGATAACGCGAATTTTGCGTGAGTTAGTCTGAAATTATCCATCATTTAGATCCTCCTGTGGTATACTGAAAAAAGGAGTTTAGAACCTGTTTGAAATGGAATAAAAATAAACGAAAAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCATATTTATTGAAATGTTATCCAATTCAGTTTGTGAAAGTTAATTAGTTTAAAGCTATTTCTAGCAAAAAACTCTTATTTACTCCGAAATTTTAGCAAAAAACTAATTGCATTGTTATATTTTATGTAATTTTTCGCT # Right flank : GTTTCTCCTGACCGGTCTTGCGGTAATTTCAAAATCGGTTCCGCGATACGCTACAAAAGCAAATCTCTATTACAAACCCAATTGTGCTCCCCGTCAGCGATGCAGGCGGGGAACTTTTTGTTTCAAAAATGGTTGAGATCTATGTTATATAATAAACATTCATGAACTCTCGTTCGCAAACCTAGCATGAAAATAGCGAGGGTTTAGTGGTCGGACCTATTTCCCATACTGCTACTACATGACGCGAAACACGTTCTTTTTAATGGTGGTGTAACCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15581-15948 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORY01000019.1 Paenibacillus dendritiformis strain J6TS7 sequence019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 15581 32 100.0 34 ................................ TAAACATGGTCTTAATATCTTCAGCGTTTTTCCC 15647 32 100.0 37 ................................ CTGTACTGCTCTAAGTCTGCCTCTGGGTGGGCCGACA 15716 32 100.0 36 ................................ ACGCCTAACTCGATCATTCCCGCAGGTCGAAGCCTT 15784 32 100.0 35 ................................ TGTTCGATCTGCCGGGCTTGCTCCGGCGTAACATA 15851 32 93.8 34 .............T........A......... TCCCAGCAACGTTCTGTGTTATTTTCACGAACAT 15917 32 75.0 0 .....G.......A...CAT..AT...A.... | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 94.8 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CAGGAAGCGATATGACGTATCGTGGCGGTGATGTACCGTGTTGTGTTCATCAGTTTCCGTCCCCATACAAGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGCGGTGGGGAACAGGGGGGGAATCTAGCCGAGTCTATGCTTTCATATCCACTCCACGGAGTTTCCGATTTTTCGGTTTCTCTATTGAGAGGGCGATCTAACTCAGTGCTTGTTCAGAATAGTCTTAAGTTAACCGTCATTTGGATCCCTGTGATATACTGAAAAAAGAAACCCGAATAAAATGGAAAAAAAGATTCAATAAACCGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCATATTTATTGAAATGTTATCCAATTCAGTTTGTGAAAGTTAATTGTTTCAAGGCTATTTCGAGCTAAATCTCTCATTTGCTCCGAGGTTTTTGCAAAAAACTGATTGCATTGTTATATTTTATGTTATTTTTCGCT # Right flank : TTGTATGCGCTTTCTACAAGAGTGCGAAGGACACGGCTAGAGGCGTGTCCGAAAACTTCTGAAGAGGTAAGTCAGGCGGGATAGTAATATCATCTGATTGTCTATGGGTGGGCCTCGTTTTCGCATTACATATCCCTATTGGTATCAAGCGAATCATATTTGAAACAGTTTATGACTTATCCGTATCCTCATATTAAAGATAACGTAAAATCAACAGTGACCGCTGTTCTGCATGCGAAAAAAGGGAATAGAAATCGTGCCCTTGCACAGCTTGAAGAAGGTTTGCAAAGCGGCGGCGTGAATAACGCAGTATGCCTGAGCGTAACGCAATTTCTGTCGCATCGTGCCAAGGTGTATGCCATAAATCAGTGCATTGCCATGTACGGTTCCCTATGCGCACTCTCCCCTTCAGTCAGAAATGTGCTCGTTTTCTGAGGGGATGGGAGATTGCTTATAAGGATGAGAAGAGGGGGATGTGCCCCAAGCACAGAGCGGATTGT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25600-25238 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORY01000033.1 Paenibacillus dendritiformis strain J6TS7 sequence033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 25599 32 100.0 35 ................................ CACATGTACATGTTTATACCTCCCCGCGTACGCCC 25532 32 100.0 33 ................................ CCCCTCAATTAAAATAGCCCCCACGCTGCCGTG 25467 32 100.0 33 ................................ TCCTAATACCTTCTGCCGCGTTATTACTTGGAA 25402 32 100.0 35 ................................ ATCATCTGTCGGCGGCACCGGCTCGCCCGTAGCGT 25335 32 100.0 34 ................................ CCGACATATGCGCTCGATGAAAACCCGGGCGGTC 25269 32 93.8 0 .............................TC. | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.0 34 GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Left flank : GTTTTAACCAAGAAACGATTGTTTTGGTATGTTTTGTGCTATTTTTCGCTGTCGCATCCTATGTGGATGCGTGGATTGAAATTTAAGCTGATTGGCTACCCCATTCTCACATGCTTGTCGCATCCTATGTGGATGCGTGGATTGAAATTCGCTCAACCCCACAACCACACCATGCTCGTCCCGTGTCGTATCCTTATGATACCTTGCTTTCTTCTTGAGTCAGTCGGGCCGATTCGTTGGATACTTTGTTTGCCTGTGATATACTGGGCAAAGGAATGGTAAGAGGGGATGCCCAAACACGAAATAAGAGCGACATGTCCATTAACGACAGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCAATTTTATTGAAATGTTATCCAATAAAGTTAATTTATTTTGATTGTTGAATCTAAATTGATTTGTTTTCTTGAAGTTTTTAACCATAAAACAGCTTTTTTTGTATGTTTTGTGTTATTTTTCGCT # Right flank : TTAAACGCTGGCGGAGCACCGTCAAGGGGTAAATGTCACGTCCTAAGTGAATCCTTGCTAAACTGACTTGACGAGTGTTTACTTGCTCTAATCGCTTGGTACAAAATCGGTTGTTGGAGATGATAGGTGTTTGAAGGGATGAAGCGGTCATTGGGGTTCTATTGCGAGAGCCGCCCCAATAATCTTTCTAGTCCTCCTCCCACTATAAAGTAATATTTTCTCCTGTTTTCTCGCTCATTCTTAATATTTCAACAATTGACAGATTGAGAGGCGAGGGTAGCAAATGTGTTAATAGTCCCTTTTCCAGTAAGAGCGTAGGCAGGAATAGAGCTTAGGAATGTTTTTCCAAAACTTGGGTCGAATTATGATCGCACAGTGGATTTCCACGTCTGGGGTTTACCCTCCCATGTCACGCTGGGTCTATGCCCTCACATTCCTTCGTTCTACCTCTCAAGGGGTGGGATGCCGATTCTTGCTCCTTTACGGGGTCGTTGCCCTTA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21587-21948 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORY01000055.1 Paenibacillus dendritiformis strain J6TS7 sequence055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 21587 32 100.0 34 ................................ GCAAATGGCGCGAACGGCAAAGGAGGCGTTGCGT 21653 32 100.0 34 ................................ ATTTCGTGCTCATCATTACCGCTAATCTCTCGTA 21719 32 100.0 34 ................................ CACTCATGAGCATGGCTGCAACGAAATCAGAACC 21785 32 100.0 35 ................................ GGCAACGTCACATATCCCCGGCCTGTGAATCTACA 21852 32 100.0 33 ................................ CCAACGAAATGATCGAGGCCATAGAAGAATACT 21917 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CCATGCGCTGATTACGGACAGAGAGCACGCGGTGGAGCAGGTTGTTCGCATGGTGCGAGAAGGCGTTGTCCGCTCTGTGCAGGGCCATGACGTGGCGATTCAGACCGATACGGTCTGCATTCACGGCGACGGCGCTCATGCGTTGGCCTTTGCCCGCAGCCTCCGTGAGCGGTTGGAGCAGGCGGGTATTGCGGTAGAGCCTGTTTAGTAGAGAGGGAGCATAATTGGATAGGGGAGTTGACCTCATTCTATACTATGAACAGTAAAATGTGGTAACCTGTAGATGTGAATTTAAACATAGATAAGCCCATCTATGCTCTGGTGCGAATGTATAGTGCACATGAAATTCCCGGGGGATTCGCACCATTATTTTTCTAAAATATGGATTTTCTCGGTGTGCTATATTTGTAATGGATGTAAAATTGGATTTTATTAGTCACATAATTGACATTTTTAATCATTTCCAAGTTATGAATTGATTAAAAATGTCAATTTCCGCT # Right flank : TCTTGGATGTGGAGCTGATGCACGATAAAAATAGGCCGCATCCTCCATGGTACAAAAAAAAGCATCTCAGCCCGTATCAAAAATGACGCGGGGGGAGGATGCTTGTCTTTTTTTCTCGAACGTATGTTCCCTGACAGCCTGTTGTCACTCACTACAACCATAATAGAATCTAAAGTACGATACGAAGGAAGGTGAGGATGTACGTAACTATGAATACGACAGTCAGCGAGCAACAATTACATCCGAATGTGGTACCTTATTGGCGAATATATCGCCTCTTATGTGCACTGAAGCGGACAGCGCTGGCAAGCATCCCGATTATTGTTTATTTGATGTGGCTTCCCCAATGGAAGTGGATTATATATGTTTCCGCTGCCTATCTCTTTATTCATTGGAGCAAGGACTTATTTTATATCATATATGGAGTTCGCTTCAGTTATGTCCGAAGAAGTTACGTCCTAACAACGGATGAGATCGTTATTCGGTGGGGGAGCATATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33521-33949 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORY01000055.1 Paenibacillus dendritiformis strain J6TS7 sequence055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 33521 32 100.0 35 ................................ TCTACCTGCATCAAGGCTATAGAGGCCATCCCGGC 33588 32 100.0 35 ................................ AGCCACCGTTTCGGCTCGATTGATATTGGCGTGTA 33655 32 100.0 34 ................................ CCCCTTAAAGTATTTACCCACATTGGGCCTAACG 33721 32 100.0 34 ................................ CCCCTTAAAGTATTTACTCACATTGGGCCTAACG 33787 32 96.9 33 ...................T............ CAAGAGCTGCCCAAAACGTCTACGATCATATGA 33852 32 100.0 34 ................................ GTCTTCTCGCTGGCCCGATCGTCCAACTGGCCAA 33918 32 96.9 0 ..................A............. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTCTGGAAGTAGGTGGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACAACCAGCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAGTTCGCCAGCTTGAAGATTCAACTTATCGATATGATTGATGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAACAACTACAAAAACAAGGTGGAGCATATTGGCGTGAAGGCATCGATCGATATGGAAGGGACGCTAATCTTCTAGTGCGAATGTGTAGTGCACATGAAATCCCCGGGGGATTCGCACCATGATTTTTCTATATTATGGATAAAAACCATTTTATCGTTCGTTACAGGAGTGAGAAATGACCTAGTTTAGAATGATTCTAGAGCTAATTTGATTAATTGAATCATAGTAAGAACGAAAAATGATTGTAACAATCATTTTTCGCT # Right flank : TCTCATACAAAGTCGTTCATAGTTAGTTCCCCTTGAAAAAATCAGGGGTTGCAAACAAAATAAAATGGAATTCAAACACTCAAAGCGGAAATTGTTATTGTCAAGATAACAATTAAGAGGAAAGGGGAGGGGGATCTTCCGGTTCTGATTCCCCTCGATTCTATTGGTAAATTATCCATTTATCAGTAGAATTAATGGATCTTGGGACCTACGCTGAACTCGATAATATAGGATTTCCAAATTTAGGTTGACGTAGATGGATTGATGAATACAATATAATATGTGCACATATTTAAAAGCGAGGAGGTTATATGGTTGTTGAAAAAAAAGTTTAACGTCACAGGCCTACTTGCATTTCTTTCACTAGCATTAGTTTTTTTAACTTCAGTTTCTGCTAGCGCGAATACTCGTTTTGTATCCTCAGAGGTGCCGACATACTTTGCATGCGAAGACATCAAAGGTGAAGTTAGTTATGAAAAAGATGAAAATGGTAAAATTGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 38416-39444 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORY01000055.1 Paenibacillus dendritiformis strain J6TS7 sequence055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38416 32 100.0 35 ................................ AAACTGGATGAAAAGGAAACGTGGCGCCGCGTAGA 38483 32 100.0 35 ................................ CTTCCCATCGCGGCTCTTTTTGTTACCTGCATTAC 38550 32 100.0 33 ................................ AGCACGGATACGTACGATGCAACAGGCGGCGAG 38615 32 100.0 35 ................................ CTTTGTTGGAAATTGAAATTGTGGCGGTTTTCCGT 38682 32 100.0 34 ................................ TCGTAGGTACGATGGTATCCGCGACCGGTCTGCT 38748 32 100.0 34 ................................ CGAGGTTATCAGGGCTAAGGTATGGGACTGGTAT 38814 32 100.0 34 ................................ TCGCGAAAGTAAATCGGATTCGAGTCCATGTCGA 38880 32 100.0 35 ................................ CCAAGTAATCATATATTCATTCTCCTGCTCGTCAA 38947 32 100.0 35 ................................ CGATTGGAACGGATCCTGTCTTGGCAGCCGGCGGG 39014 32 100.0 34 ................................ CGGTCACGGCTCCCTTCGTAACCGTTCCAATACC 39080 32 100.0 34 ................................ TCCCTGCATGAAGCCATAAGAAGAACGTCCTCAA 39146 32 100.0 34 ................................ AGCATCTGCATGACTCATGCCAAGTACCTCAGTT 39212 32 100.0 34 ................................ GTTTTGACTGAATTGACGGCAAAAATGATGAAAA 39278 32 100.0 35 ................................ CGTCTGTCATGCAAGTTGCTAATGTCATCGTAAAC 39345 32 96.9 36 ....................A........... AGCAACCGCCCGAACATGGGCATATGCAGTGTTGCC 39413 32 71.9 0 T..A..C...C.AT.A..T.........C... | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.1 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TCTGGGAGAGAAAATCAGTTTGGAGCTTGTCCCACATGCCCAGACCCTGCTGCTAGCTCGTCATTTGCGTGATGATCTCAGTGAATACCCTCCATTTCTGTGGAGGTAGGTGGTATAATTGTTGGTATGTATCACTTATGATGTCAGCAGGACCACCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATTCCAAAATTATGGACAGAGAGTGCGAAACTCTGTTTTTACTGCAATGTAGACGCAGCACAATTTGCCAGCTTGAAGATCCAACTTATCGATATGGAAGGGACCCTAATCTTCTAGTGCGAATGTGTAGTGCACATGAAATCCCCGGGGGATTCGCACCATGATTTTTCTATATTCTGGATATAAACCATTTTATGGTTCGTTGCAGGAGTGAGAAATGACCTAGTGTAGATTGATTCTAGAGCTAATTTGATTAATTGAATCATAGTAAGAACGAAAAATGATTGTAACAATCATTTTTCGCT # Right flank : TATCACGTCGGCACGCACAACATGCGCATGACGTTTGTCGATTCTAATGCGGATCCAAGAAGAAAAACGTCCACGCTTGCAGAAAAATTGACTCCCAACGACAGCGGGCCGCAGGCCCATCATTGCCACATCAGAAACAGCCCCTCCTTCCTTCATAACTACGCACCTGCCGCAGACTTTCCCTCTATCCTCATGCTTACCGATTACATCCCAACTCCCTCCAGCCAAAAATACAACGACAGCTTTCCCCGTACATGCACTTCTGGGCCATCGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAAGAGATACCGCTAGGCGCAAGTCGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATTTGCTGCAATCGCCGTGTTCATCAAGCAATTGACGCTGCTTGTATCCTACGTCAAGAACAATGCGTTTCCGCAGCCGTTGGCGGAAGAGGATGAGATGAAGCATTTGC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //