Array 1 214878-212346 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACBF01000001.1 Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 contig00047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214877 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214816 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214755 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 214694 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 214633 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214572 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214511 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214450 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214389 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214328 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214267 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214206 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214145 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214084 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 214023 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 213962 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 213901 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 213840 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213779 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213718 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213657 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213596 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213535 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213474 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213413 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213352 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213291 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213230 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213169 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213108 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213047 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 212986 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 212925 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 212864 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212803 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212742 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212681 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212620 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212559 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212498 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212436 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212375 29 96.6 0 ............T................ | A [212348] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232808-231500 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACBF01000001.1 Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 contig00047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232807 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 232746 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 232685 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 232624 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 232563 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 232502 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 232441 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 232380 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 232319 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 232258 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 232197 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 232136 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 232075 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 232014 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 231953 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 231892 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 231831 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231770 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231709 29 100.0 31 ............................. GATGATCGTTTTTTCGTTACGTCGCGCAAAT 231649 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231588 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231527 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //