Array 1 21967-21755 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000028.1 Nocardiopsis sp. SBT366 scaffold30_size63288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21966 29 100.0 32 ............................. GTCACCTGGAACCCGCTCGGGAGCACGTTCAC 21905 29 100.0 32 ............................. CCGGCCCGCGAGTCCACCTTGGGTCCGATTCA 21844 29 96.6 32 ..............C.............. GGCGACCGATCACCCTGCTCAAAGTGGGCGCG 21783 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : TTCGAGATCTCCGAGGAGATGATCGCGCTCGCCCGTCAGAACGTTCCCGAGGCGACGTTCCGCCGGGCAGACATCGTCGACCTGGACCCGGTGGAGTGCTCGTACGACGCCATCGTGGCGTTCTTCTCGCTGCTCTGCCTGCCCAAGGAGCGCATTCCCCAGGCCCTGGGCCGCGTGCGCGCCTCGCTGGTCCCCGGCGGCCTGGTGTGCCTGTCGATGGTCGAGGCCGACCTGGACGACCAGCCCATCTCCTTCCTGGGGAACGAGATCCGGGTGTCCGGCTACCCCCGCGACGAACTGAGAGAGGTCGTGGAGCGGGCCGGGCTCATCATCGAGGACGAGCGCGTGGTCACCTACTCCCCCGACGGCGCCCACCCCGAGGTCCAGATCTTCCTCACCTGCCGCCGAGGCGCGTAGCCGTAGGGAAGGTGGAAATGTCCGTTTCTCGAGAAGTTACAAAAATGGCCACTTGCCACCGGTAAGTTTGCAGGTGAAAAAGG # Right flank : GCCGGTGTCCCGGGCGAGATGGCTGGGACTGTGTGCGCCCTGCTGGGACGGGACATGACTGAGGGGGACCGCCATCGTGGTGGTCCCCCTCATTGGTCACATGGCTAGTCCAGGCCCAGGATCGGCTCCAGGCCCAGGGTGAGGGGCTCGGGAAGCTCTGCGGTCCTGCGGATGCCGAGGAGGACTCCGGGCATGAACGAGGTGCGGTTCATCGAGTCGTGGCGGATCTTCAGGGTCTCGCCGTCGGTGCCGAACACGACTTCCTGGTGGGCGATCAGGCCCTGGATGCGCAGGGCGTGCACGCGGACGCCCTCGACGTCCGCGCCACGGGCCCCGGGGATCTCCGAGGTGGTGGCGTCGGGCATCGGCTCGGTCCCGGCCTCACGGCGGGCCTCGGCGACGAGCTCGGCGGTCCGGTAGGCGGTGCCGCTGGGGGCGTCGGCCTTGTTCGGGTGGTGCAGCTCGATGATCTCCGTGGAGTCGAAGTAGGGCGCGGCCTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9522-7662 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000042.1 Nocardiopsis sp. SBT366 scaffold44_size52126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9521 29 100.0 32 ............................. GACTGGTCGCAGGCATGGCGGAACTGGATGCT 9460 29 100.0 32 ............................. TGCCAGTAACCCCAGAACCTGCCGGGGCCCTG 9399 29 100.0 32 ............................. CGGTGGACGAACTCCGGGACGCTGTGCGGCGG 9338 29 100.0 32 ............................. CGGCCGTGTTCCCGCCGCAGCCCGCCGGATCC 9277 29 100.0 32 ............................. GCCTGCCCGGCCACGGTGGTGCCCGCTCGTTC 9216 29 100.0 32 ............................. TCGCCTCATCGACGTAGGCCAACGCGATCGTG 9155 29 100.0 32 ............................. TCGCCTCATCGACGTAGGCCAACGCGATCGTG 9094 29 100.0 32 ............................. TTCCTTGGTGTGACTGGCTGACCAGCGGCAGT 9033 29 100.0 32 ............................. CTACCCAAATCAGCACAGAACGGGTCTGTGAA 8972 29 100.0 33 ............................. CACGACCGCGCCCCGCCCCCGCCGCGAACAGAC 8910 29 100.0 32 ............................. GACGCGTTCGTGGTCGGCATCGACCTGGCCAA 8849 29 96.6 32 ............................A GTTCGGCACGTCGGGGTGGTGGCGGGCGAGGA 8788 29 100.0 32 ............................. GGCACATGGTGCTCGATCAGGGTGCGGACCAG 8727 29 100.0 32 ............................. TGGTGTTCGTCCACGTTGAGCAGACCGCGCAG 8666 29 100.0 32 ............................. GGCACATGGTGCTCGATCAGGGTGCGGACCAG 8605 29 100.0 32 ............................. TGGTGTTCGTCCACGTTGAGCAGACCGCGCAG 8544 29 100.0 32 ............................. GGCACATGGTGCTCGATCAGGGTGCGGACCAG 8483 29 100.0 32 ............................. TGGTGTTCGTCCACGTTGAGCAGACCGCGCAG 8422 29 100.0 32 ............................. GGCACATGGTGCTCGATCAGGGTGCGGACCAG 8361 29 100.0 32 ............................. TGGTGTTCGTCCACGTTGAGCAGACCGCGCAG 8300 29 100.0 32 ............................. TTGTGGAGGTCCCGGCGGATGTCGCTGGCCTT 8239 29 100.0 32 ............................. ATCTCCTCCATCGCGTCGAACCAGCGCACCCA 8178 29 100.0 32 ............................. TCCCACAGCGTGACGAGGGTGCCGATGATCCA 8117 29 100.0 32 ............................. TTCTACCTGTCCTCGACCTCCAACGACTACGT 8056 29 100.0 32 ............................. ACGCTCACCGCTCAGCGTGAGGCCCTGGTCGA 7995 29 100.0 32 ............................. ATCTGGCAGATCCAGTTCCGGGTGCCGGGTGA 7934 29 100.0 32 ............................. GTGGCGTCCCGGGCGTCGTCGATGACGGCGGC 7873 29 100.0 32 ............................. ACCACCCCGGACCTGCCCGAGGAGGCCATCGC 7812 29 100.0 32 ............................. TGGGCGTCAGCCCGGACACCGTCGACACCTGG 7751 29 100.0 32 ............................. CATCACCTGGATCCCGATGTGGGTCGCGTTCG 7690 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : CAAGCCGATGTGACCACGCCTGACCTTGAAGAACAGGTTGTGGACCTTTGGGATCCCATCTCTGGCTCGGTTCCCGGAGCCATCAACCACAGCTCCGACCAGTGGTGAACACACGTTGGCCCCTTCGGTGAACAAGGAGGCGACTGAACATGGCGAACATGATTGCCATCAGTGCGACGGCTATCCCTGACCACCTCAGAGGCGCACTCACGCGGTGGCTCTTGGAAGTCACCCCCGAACTTTACGTCGGGACGGTCTCCGCCCGTGTACGCCGTGAATTGTGGGAGGCCACGAGCGCCTGCGTGGGTGAGGGTGTGGCTGTTCTTCTCTACTCTGCTGACAACGAGCAAGGGTTTGAGATTCGCATGGCGGGGCATCGCCGACGTGTTCCTATCGACTTCGATGGTATGACTCTGATCGCGTTCAGTGAGTGGCAGCAGAGACATCCGCCCGGGGTGTAACAAATCCGCACGGCCTTGTAATAGTGCAGGTCGGGAAGT # Right flank : TCGACCAGGGTGTGGCGCAGTTCGGGGATGTGCTGGGCGGGAATGGGGGAGTAGGGCTCAGTCCTCATGGGCGTGACTTTCCAGGTAGGTGTTCATCGTGGTGGCGATCTCGGTCCGCTTCTTCACCAGCGCCAGTACGTCCTCGGCGACCATGGACAGCGACAGGGCTTCCTGGGACAGGTCGTAGGCGCACGCGCGGTGGTTCACCCCGATCTGGTCCAGGTCGTTCAGGTGCTCGGTGAGCTCGGGCTCGTTGATGGCCTGCTGGGTGTACTCCAGAGCGGTCGCGAGCCGGTGCGCGGCGCGGCCCAGGATCAGTCGGCGCAGCTCGGTCTGGCCGGGGTCGCTCGTGTAGGTGCGCTCGTGCTGCTCTTGGCCGGTGGCCGCGACGGCGCGCACCATCGCGCTGACACGGCCCGGGACCCGGCTGGTGCGTGTGGCCGCGCGCAGTGCCACCCCGTGAAGGTGGGAATCGGTCGGGTACGGGGCGGGGGCGTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19071-23064 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000042.1 Nocardiopsis sp. SBT366 scaffold44_size52126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19071 29 100.0 32 ............................. TCCGAGCCCCTCCAGGGCGCGGTGCAGCTTGC 19132 29 96.6 32 ............................T TGGTCCTGCCCTCGAACGGAGACACGATGCCC 19193 29 100.0 32 ............................. GTAGCAGTCCTGGCCCCGCAGAAGGAAGGAAT 19254 29 100.0 32 ............................. GTAGCAGTCCTGGCCCCGCAGAAGGAAGGAAT 19315 29 100.0 32 ............................. CCGTGGCCGACAGCTCCCGCACCCTGGACCCG 19376 29 100.0 32 ............................. TGGTCAGTCATGATGTCGGACCCGTCGTGGTT 19437 29 100.0 32 ............................. GCCCAGCGGCCGCCATCGCGCGCCCAGGAGGG 19498 29 100.0 32 ............................. ATGGTCGGCCCGGTCGTCTTCGCCGGGTGGGC 19559 29 100.0 32 ............................. ACTCATCAGCGGGCGTCCTTCCGGGTGAGTTC 19620 29 100.0 32 ............................. GCAACTACGGGTACAGCCTCAACGCGGCCGTC 19681 29 100.0 32 ............................. TCGAGTGCCCATCCCGGCGCAGGTCGGCAACG 19742 29 100.0 32 ............................. GCTCAGGACGTTCGGGGGTGCCGCATCGAGGG 19803 29 100.0 32 ............................. TCCACTCCAAGCCGTTTCTACGCTCGGGGGCG 19864 29 100.0 32 ............................. GGACGCGCACAGGTTGGGCAGGTGCACGGTGA 19925 29 100.0 32 ............................. CGTCTCGGGGTCGGGCTCGTGGTCCTGGACCT 19986 29 100.0 32 ............................. TTCTCGTCCTCCCTCCCGGACGGACGGGCTGG 20047 29 100.0 32 ............................. GGGGTGCCCGTGTCCGGGACGAAGGTGCTGTG 20108 29 96.6 32 ............................A CCGCCGGTTCCCTGCGCGACGGCCGCGAGGTG 20169 29 100.0 32 ............................. GAGGCCGCCCTCAAGGAGGCCGCCGAGAAGGT 20230 29 100.0 32 ............................. TGGGAGCGGGTGACGGTCCGCACCGGCGCGTC 20291 29 100.0 31 ............................. TCCGCCCGGACCGGGCCGAGGAACGCGCCGA 20351 29 100.0 32 ............................. AAGCAGGCCCGTGAAGCCGGTGACCAGGGGCG 20412 29 100.0 32 ............................. CGTGTTCCGGTCCCCCTCCGCCGAGCGGTGGA 20473 29 96.6 32 ..........................T.. GCCAGCCCGGCCCCGGAGGCCGCGACGGTCGT 20534 29 100.0 32 ............................. CCGCCGCCGGTCGATCCGACCCCGCGGCCCAC 20595 29 96.6 32 ............................A GCGTCAGTACGCGGAGAACGTTGCGGAGACCC 20656 29 100.0 32 ............................. GGTCAGATCGCTCGGAACCTTGCATTCCCGCA 20717 29 100.0 32 ............................. CGCAACGGGTCGTTCTACACGCGGGACACCCG 20778 29 96.6 32 .......G..................... ATCCACTGAACACCGCAGGGCCGGGAGAACAC 20839 29 100.0 32 ............................. ACGCGGCATGAGCCACGACCTGACCGGGGCCC 20900 29 100.0 32 ............................. CCCGCGGAGAACGGTGGGGGTGAGGGCTGATG 20961 29 100.0 32 ............................. CACCACCATGCACAGGATCGTCCTCCCCTCCG 21022 29 100.0 32 ............................. TGGATGCAGGGCCTTCCTGCCGGCCACGTCAC 21083 29 96.6 32 C............................ ATACCGGACGCTGGCCCGATGATGGGGACCAT 21144 29 100.0 32 ............................. TGATCGCTCCGGCGCCGATCGTGCGCGCCCAG 21205 29 100.0 32 ............................. CTGGACGAGCACGGCCAGTGGGCGGCGATCTG 21266 29 100.0 32 ............................. CTGGCCGACCAGGTCCGGTGTGATCCGCAGCA 21327 29 100.0 32 ............................. TGGACGAAGCGTTCGCGCGCCTGGTGGGCCTG 21388 29 100.0 32 ............................. GCGGTGGCCAGGACCGGTTCTCGACGGTCTTT 21449 29 100.0 32 ............................. TTCACTGGCCTGTGGTTCCGCCGGTTCATCCT 21510 29 100.0 32 ............................. CGCCTGGACCACGGTGCCCTGACCGAGGAGCG 21571 29 100.0 32 ............................. TACATCTCCCCGCCGGTGAACTGGGCCGCACT 21632 29 100.0 32 ............................. CAGCTGCCCAAGCCGCTGCTGGCGCAGGCGGG 21693 29 100.0 32 ............................. GCGTATATGCGCCATAGGAGGCGAACACAGAT 21754 29 100.0 32 ............................. ACCACCGAGGGCGTGCGGATCTACCCCGAGCA 21815 29 96.6 32 ............................A CCCCACCTGCCCGGCCTGGCCCGACGAGATCG 21876 29 96.6 33 ............................A GGGCGGCACCGCCGCCTTCTCCGGCGGCGCCCC 21938 29 100.0 32 ............................. CGCGTCGGGTCGGGGTGGACGGCCGTGGGCCG 21999 29 100.0 32 ............................. GTCCACGGCAACGACTGCCGCGGTTCCTCGGT 22060 29 100.0 32 ............................. TGTCGCGACAATCATGCGCCTCCTGAGGAGGC 22121 29 93.1 32 .........A..................A CTACGGCCCCTACTTCCCCGGCGCGGAGTGGG 22182 29 100.0 32 ............................. TAGCCACCGAGCCCGCCACCACCCCTACCGGT 22243 29 100.0 32 ............................. TGTCGTCCCATACGACCCGGCGCTCGGGGTCG 22304 29 100.0 32 ............................. TGTCGTCCCATACGACCCGGCGCTCGGGGTCG 22365 29 100.0 32 ............................. TGAGGGAAGAACATCGGCCGCCCGTCGGGGGC 22426 29 100.0 32 ............................. GCTGTCCCCGAGCTCACCGAGACCGACGTCAT 22487 29 100.0 32 ............................. GTCTTGCCCATGCGGGGCTTGGCGCCGATGAG 22548 29 100.0 32 ............................. CCCGGAGGAGGTCGTCCGGTCCCTTCAGGAGA 22609 29 100.0 32 ............................. ATCCTGGAGAGCTACCCGGCCGAGTGGGTCGT 22670 29 100.0 32 ............................. CCCGGCGGCTGCCGGTAGGTAGTAGTAAACGT 22731 29 100.0 32 ............................. GGCGGCCGTCTGGTCCGTGCGCCCGCCGGGGA 22792 29 96.6 32 .G........................... CTTGCGAGTGGAGGCCGGAGCAGCCGCGGAGC 22853 29 100.0 32 ............................. TGATGGGTCGAGCGGTTCGGCGTAGTCCAGGA 22914 29 100.0 32 ............................. CCCCCACCCGACGCCCACCTCCAGGCCGATGC 22975 29 96.6 32 ...C......................... CGCGAAGCGAAGTCGAGGCCGACCCCGAACAA 23036 29 89.7 0 ....................CC..G.... | ========== ====== ====== ====== ============================= ================================= ================== 66 29 99.2 32 GTGGTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : CGGGGTCGTGCTGCAGGGTCGCGTAGCTGGAGGGGTCTTTTTCTTGGAAAAGGGGGCTTATCTTGCCGATGTCGTGAAGGCCTGACCAAAAGGACACGAGGCTTCGACAGGTCGATTGGGGCAGGCCGAGCCGTTGTGAGATCTGTTCTTGGATCTGTTTGCTCAGTAGTCCGTCCCACAGTGCTCCTGCGACGGCGGCCACGTCACTGAGATGACAGATGAGGGGGTAGGGCGCGGGAAGACCCTTACTCTTGCCCCATAGGCGTGCATCCAGGTGTTCACTCACTGGGCGTCCTGTCCTTTGAATCGATGCTCTCCCTGGATGCTGGTGTATCAACAGGTTCCGACAATCCGCGAGCCCGAGCTCCGGCAGACCAGGCGCTGATTCGATAGCGTCAAAGGCGATCGGACATCCCGTGAAGGAGACCCGGGTCACTTGACACCTCCCGCCTTGAGATCACAAAACAGCAACAGGAGACCTCAGGCGCAGGTCAGGAAGT # Right flank : GACACCCGCACAAGGTCGAGCGCTCGATCGCCTGGGTGGGTTCCTACCGCAGGCTGAAAGTGCTCTGGGAGCGCAAGGCCCGCACCATCCTGGCCATACTCGGCATCGCCTCTATCCTCATCTGCTGTAAACACCTAGCCAAGCACGCTGTGAGCTTTTGAGATGAGCTCTAAGAACATGCACTTGATCGCCTATGCCGATGAGTCGTTCCTCGGACATGACTACCGAGTGTGTTGAGTGGTGGCTACGGCTGCGGTTTACCCCTTCCACTTGGAGGAGGCCCGTCACGCCACGATTGACCTGCGCGGCGCCCGCAGCATCGGCAAGACCCAATGGACTCAGATGGAAGCCTTTGCTGCAAGCCCGACTCTGGCGCCCTGGGCCTGGCGCCCTCGGGAGGGCTCGAACCCAACCTTCTAATCCGTAGACAGTGGATGGCAGGACCAATATCCACAGCTCAGCGAGGTTACGCAGGAAACCCGGAAGTTGCCCGTTCCACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38439-38164 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000053.1 Nocardiopsis sp. SBT366 scaffold55_size39694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38438 29 100.0 32 ............................. CCGAACACCAGGGGGCGCCCACCATGGCCCAC 38377 29 100.0 32 ............................. TAGAGGTCGATGGTGCTGTCAGGGAAGGCCAG 38316 29 100.0 32 ............................. GGCCGGTGTGACCACGAGGGTCGCCTCGCGTG 38255 29 100.0 32 ............................. GGGTTGATGCCCCAGCGGACGGCCTCGGTCCA 38194 29 89.7 0 ........................T..AC | C,A [38168,38170] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : CTGGTCGAAGAACACGTCGCCCCACGCTGGGGCGCACTCATGCTCGGCTCGAACTGCCACCCCTCCTACAGCAAGGACAACCCGGCCACCGCCGAGTAGTCCAGGATCGCCACCCTCGGCGGGGCCCGGGACACTCTGGGCCCCGCCCCACCCGAACACGGAGACACGATGGCTGCCTCGCCCAAGTCCGACGACCCCCGCCCTGCTCTGGTCGACCCCCAGGAAGCAGGCACCATCACTGGCTACACCGCCCAGCCTCCAGACCGTGTGGAGCTGGTCAACCGCATCAAGGCCGCTGAGAACGAGCTCGGCGGTCTCTTCGCGGAACTGCGCGAGCGCCAGGACGTCGACCTGCGCATGCTCGCCCTGGGCCGCACCAACCTGCAACAAGGCTTCATGTGGACTGTCCGCGCCCTGTTCCAGCCCGAATCCCGCCTGTAACCCCCACTACCAAGAAGGGGTGAGCCGCTCGTCCACTACCGGGGGATCGCCCACGAGTA # Right flank : CGTCTGGCCCGCCGGGGTGTGGAGTCCTCGCAGCGGCTGGGCAGGTACCGGTGGCAGGTGGGACGCACCATGGCCTGGCTGGCCGGATGCCGCCGCCTGCACCGCCGCTACGAGCGCAAGGCCGACCACTTCCTGGCCTTCCCCGGCATCGCCTGCACGCTGATCTGCTACCGCCGACTCACCAAATGAGATGAACTCCTAGTACGGTTGCCGCCGCGCTCCAGGCAAGACAGCCAACCTGCGGCCTGGGCCGCTCCGAGATGCTCACTGATCGTGGACCGCGAAACACACCAGATGCGCGATCGTGGTGCGTACAGAGCCCGACGAGGTCATCAACAGCCCCAGGGTGGCCAGTGAGGCCTGCACGGTTCGGGGAAGATCTGCTGCGCTCACCGTGAGGCGAGCACACGATCCTGGATCGACAGCGACACGTTCCATGGGTCTCCATCCTGTGCTCGTGAGCTCTCAGCGCTGAGGGTGTGCCGCGGGCTATTGCCTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14948-15223 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000057.1 Nocardiopsis sp. SBT366 scaffold59_size36431, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 14948 30 96.7 31 .............................C AGCCCACGCCATGGGTGGGGGCGGCCAAGCC 15009 30 100.0 32 .............................. GCGAGTTGCACGACGCCCTTGACCGCTGCATC 15071 30 100.0 31 .............................. AGGCGTACAGCCTGGTCAACCCCGACCTCAA 15132 30 93.3 31 .....T.......................C GCATGTGGCCCGCAGTGGCGATCTCGTCACC 15193 30 83.3 0 ................T.......A..AGC | A [15196] ========== ====== ====== ====== ============================== ================================ ================== 5 30 94.7 32 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : CTACCACCTGACCGCCTTCGTCGGCCCCGAGCTCCCGGATGTCCTGGCCCTCGCCGACGTGGTGATCTCCCGCAGCGGCGCGGGCACCATCGCCGAACTCACTGCCCTGGGCAAGGCTGCGGTCTTCATCCCGCTGGCCTCCTCCGCCGGTAACGAGCAGGCGCACAACGCCCGCCACCTCCAGGAGTCCGGGGCGGCCGTCGCCCTCCTCGGCGAGGTCAACCCCGCGAACCTCCAAGCGGCGGTGGAGCCTTTGCTCGCCGACCCGGCCACCCGTAACGCCATCGCTTCCCAGGCCCGCTCCAAGGGCCTGCCCGACGCCGCCGAACGCCTCGTAGACGTCCTCCTCGCTGCCGCCAACTGACCTCGGAGTCATCTCCACGGAGATGGCCCCATTCGTGTCATGGAATCACTTATGGCCAGGGAAATCACCAGTATCCAACTTTCGAGAAGTTGGAAAAACGACCCCTTGTCACTGGTAAGTTCCCTGGTCATAAAGT # Right flank : CCTGCTTGACTGGTGGGGTCTAAGAAGCTGGGGGATGTTGTGGGCGGTCGGGGTTGGTGCGCGGTGGGGGTCGCGGTTCTGCTCGCGGGATGCGGGGCGCAGGCAGGGGAGTCGGAGGCCCTGCCGGAGGGCGGGTTCGACTACCAGTTGGGTGAGGCCTACCCGCCGCCCGAAGGGGCCACCATCGTGGTGCGCGACGCCACGGCCGAACCGGAACCGGGCATCTACTCGGTCTGTTACGTCAACGGCTTCCAGACCCAGCCCGGGGAACTGGACTCATGGTTGGACGCGGGCCTGGTGTTGCTGGACGGCGACGGAGAACCGGTCGCCGACCCGGGTTGGCCGGACGAGATGCTCCTGGACACCTCCACGGACGACAAGCGGGAGCGGATCACGGAAATCCTCGCCGAGACCGTCAACGGGTGCGCGCAGGCGGGGTTCGACGCTGTGGAGTTCGACAACCTGGACTCCTACCTGCGCTCCGGGGGTGCCCTGAGCGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27235-27520 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000059.1 Nocardiopsis sp. SBT366 scaffold61_size35124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 27235 30 96.7 31 .............................C GGCCCGGCGCCGGACACCGGTCAGGCACCGG 27296 30 100.0 31 .............................. GCATCCGGACCGCCTCGGAGAGTTCCTCCGA 27357 30 93.3 32 A............................T CCTCCGCGACGTTGATCGCGAACCTGTCGGCG 27419 30 86.7 43 ..............T......C......GG CCGAGGCCGTCGCTCCGGCGTCATCGAACCCGTTCCGGAACCG 27492 29 76.7 0 G.........A...........-.CA..TG | ========== ====== ====== ====== ============================== =========================================== ================== 5 30 90.7 34 CTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GTCCCCACGGAGAGCGAACCCGCCCGGCCCACTCAGGGTGCGGGGGTCGCGCTGGCGACCCGTTCCACCGGAACCGGAGCGGCGGTGGTCACGGCCCTCGCCCTCACCTGGCTGAACCCGCACGTGTACCTGGACACCGTGTTGTTCCTCGGTTCGGTCGCCAACCAGCAGGTGGGGGAGGCCCGCTGGTGGTGGGCGGGCGGTGCGGTCACCGGAAGCTTCGTGTGGTTCTTCGCCCTGGGCTTCGGTGCCCGGCTGCTCCGCCCGGTCTTCGCCAAGCCCGGGGCCTGGCGGGTGCTCGACGGGATCATCGCACTCGTCATGCTCACCCTGGGTCTGCGCCTTGCCCTGGGCGGCTGACCCGAAGATCGGTAGCCTGCTGGTGAGGGGGAGAGAGGCCCCCGCGCGGGTCCCTTTTGAAGTGTTTGTCTCCGGAGTCTGTTTCTCGACAAGTTGCAGATTTCGCTGGTTCCGCGCTCTGGAACCGCAGGTCAACGAGT # Right flank : GGGCGGCTACGAAGCGACTGCTCGCGTGGGGTTGGGCTTTGAGTGCAGCTTCCACAGGCCCAGGGTGGTCAGGCCCATCACGACCATGGGCACCACGAGCACCGGGCCGGTCACCACTGACACGTCGTCGAGGCGGTCGGCGAGGATCATCGACACCATCAGCACGGTGTTGTTGACGGCATGGACCAGGACGGCCGCTTCCAGGCCGCCGGTGCGCTGTGTCATCAGGGCGAAGCACACCCCGGAGAAGACGTAGGAGGTCAGGGCCCAGGGGTCCAGAGAACCGTGGATCGCACCGAAGGCCAGCGAAGTGACCACCGTGGACACAGCCAGGGAGATCCCAGGGCGTCGGAAGCGTGCCCCCACCGCTCGGAAGAGCAGCCCCCGGAAGAGGTACTCCTCCCCGGCTGACTGGAGGGGGACGACGACGATCGCGACGAGTGCGAGGGCGATGGTCGCCGTCGTGAGCTGGAGTGACCCGAACGGCATGATCAGGTGCA # Questionable array : NO Score: 3.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34813-34417 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000060.1 Nocardiopsis sp. SBT366 scaffold62_size34966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 34812 30 93.3 31 ...C.........................G ACCTGCTGACCGGGGCCGTCCGGGTCCGCAT 34751 30 96.7 31 .............................A CTCCCACCGTGTCCCGGTACACCCCACCGGG 34690 30 100.0 31 .............................. TGAACCCGACCCGCAGGACTGAGGGGTTGAC 34629 30 96.7 31 ............................A. GGTGGTGGGCGCGACCTGGGCGCATCCCTGG 34568 30 96.7 31 .............................G GGGGGCGGGGATGTCGAAGCCCGGCAAAACG 34507 30 100.0 31 .............................. GGGTCCCGCCTACCTGCTCCGCGGGGTGGGG 34446 30 90.0 0 ...C.....................G...A | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.2 31 CTGTTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CGACACGCATCCCGGTCAGCGCAGGCGAGGAGGAACACATCGCCTATAGGCTCGCCCGTGACAGCAACAACGAAGGCGGATGCCGGTTTTGTCTGTTTCTCAACAAGTTGGAAAAACGAGCACTTACCACCGGTAAGTCCGCAGGTCAAAAAG # Right flank : AGGAGGCCACCATGGCGCCGCATGTGGCTGGAGTGCTTCCGCGCGAGTTTCAAAACTGCCCGAAGCAGAGACAAACGATCCGCGCACGCGGAATAGCGAGTTGGCTAGGGGAATGACGCGAGTACTCGGGAGAGGGCCTTTTCGCCTGCGGGTTTCCAGGTGGGCTTGCCACCTGGGAGACCCTGTTCGCCGGCACGGCCGATCTCGATGAGGCCGAGGCTCCGAATGAGGGCCCAGCCTCGGGAGCGTTGGATGGTGGCCTCGTCGGTGGGATACCTGGCGAAGAACTCCGTGGCGTTGGGGAGCAGGACCCATGCGGCGCAGAGGTCCGTAGCGGGATCGCCTGAGCAGAGTTCGCCGAAGTCCACGACACCTGTGAGGGCTCCGTTGGTGGTGACGACGTTGGCCGGGTGCAGGTCCGCGTGCAGCCACACCGGGGGGCCATGCCACTGGGGTGCGTCAACTGCGGCCTGCCAGACCTTCAGGATCCGGGGAATCTG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19635-18872 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000094.1 Nocardiopsis sp. SBT366 scaffold97_size19923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 19634 30 96.7 31 .............................C ACATCGCGCCCGCCTGGATCGCTGACCAGAC 19573 30 96.7 31 .............................C GGTCGTTTGTGAGAGAGCCGCGAGCGTCCCA 19512 30 100.0 31 .............................. TGGGCACTCTGCCGTCCATGTTGATAGACAA 19451 30 100.0 31 .............................. ACCGCGATACGGCCAAGGTATTTCTTCAACT 19390 30 96.7 31 .............................A CGACCAGCGCCGTGCCGATCGCAACCGCGAC 19329 30 100.0 32 .............................. GGCAGGATGGCAGGCACAACAAAGCACCCCCG 19267 30 100.0 32 .............................. CCGGGAAGTACGTCGGCATCTCGGGGAACCCG 19205 30 96.7 31 .............................T GAGGGGCGGGCCTGGCTCGCACGACTGGCGG 19144 30 100.0 31 .............................. TGTTGCAGTTCACGGAGACCGTGGCCGCGAT 19083 30 96.7 31 .............................A CATCGAGGCTCCTCGGGGCGGGACAGCTCCG 19022 30 100.0 31 .............................. TCTCAGAGTCGGGGTCAACAACGGCGGCCGG 18961 30 96.7 31 .............................A AGGTGAACGACTCCTGATGACGGTTGCCCCG 18900 29 93.3 0 .........................-.T.. | ========== ====== ====== ====== ============================== ================================ ================== 13 30 98.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CCGCACAAGCACCCGTTCCCACCGCCGAGACCGGGTCGGCCTCCACCCCCACCCACCAGGCGAAGACCGCCCAACCCCACGCACCGGCCGCCCTCGCCGCCGTGGTTTCGATGGCGCGCGTGACCAGCCGCGACACGCATCCCGGTCAGCGCGGGCGTGGAGGAGTCCATCGCTCTCGCTATAGGCTCGCCCGTGACAGCAACAACGAAGGCGGATGCCGGTTTTGTCTGTTTCTCAACAAATTGGAAAAACGAGCACTTACCACCGGTAAGTTCCCAGGTGAAAAAG # Right flank : CAGATTCTCCACTTCTACTCAGGGCGCACAGTTCCGGCGGGGCTGGTGGGGGCGATGTGGGTAGTGAGGGGAGAGGGATCGGTTGGAGGGGGAGTCATGGGTGAGATGGACCTGGTGTCGCTGGGTGACGACCGGTGGACACTGACGGTGGAACGGAACCTGGGGTACCCGGCGGAGGCCGTGTGGCGGGCCATCACGGAGCCCGAGGGGCTGAACCGTTGGTACCCGATGGCGGTCGAGCGACTGGACCTGAGGGTCGGCGGGGAGATCGCCTTCCGGGACGAGGAGGGCGGGGAGACGACGGCCGTGGTCACGGAGGTCGAGCCGCCGCGGGTGTTCGGCTTCCGGGAGTTCGACCCGGAGACGGGAGAGCACCAGCTGCGCCTCACCTTGGAGGGTGACGGCCGACTGGTGCTGGCTCACACGTTCACGGGCAGGGAGTGGGCAGAGCGCACCACGGTGGGGTGGCGCGCCTGCCTGAACGAGCTGGAGAACTCCCT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101254-100858 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000008.1 Nocardiopsis sp. SBT366 scaffold9_size103090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 101253 30 100.0 31 .............................. ACGCGGCAGCGATGTCCCTCCATGTGAGGTG 101192 30 96.7 31 ...........A.................. CCTCCCCCAGCACCTCAAGCGCGCTCTTCTC 101131 30 96.7 31 .............................C ACGAGTCGCCGGGCCGTGACCGGCTGGGCGT 101070 30 100.0 31 .............................. CCAAGGTCGAGACGTGGCGGGCCTACATCCT 101009 30 96.7 31 .........................C.... GCTACCGGTGCTCGATCGGGCTCGCGGCCCA 100948 30 76.7 32 ........T..A.G...C......AT.T.. AAGCGTGGATCGAGCGGCAGCTCCAAGCACGG 100886 29 80.0 0 ....-........GG..........G..GC | ========== ====== ====== ====== ============================== ================================ ================== 7 30 92.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GACCTGGAATGCCAGGTTTCTTTCTCCTGGGAAAGGGCTTGTGGATAACCCGCGAAAGCTGCCCGGGTGTGTTATGTAATTCGTCCCAGACGGTAACCAGCCGCGACACGGGGCACCTTTGGGCGCAGGCCTGGGGTGCTGCTTCCCTCGCTGCCGCCTTTTCGTTCGCCACAGTAACCAGCCGCGACACGAGCACCGATCGGCACAGGCCGGAAGACCTACCCTCCTTCGCTGCCGCTTTTGCGCCCACCACCCCAGCCACCACAACACGCGAAACGATGAACACCAGCCCTGACCCCGCACCCTCCTTCGCTGCCGCTCTTTCGTCGGGAAGCGTGACCAGCCGCGACACGCATCCCGGTCAGCGCAGGCGAGGAGGAACCCATCGCCTATAGGCTCGCCCGTGACAGCAACAACGAAGGCGGATGCCGGTTTTGTCTGTTTCTCAACAAGTTGGAAAAACGAGCACTTGCCACCGGTAAGTTCCCAGGTGAAAAAGT # Right flank : AGTATCCGTCCACCGGGGTGGCGGGAGCCGCAGGGATGCGACTCCCGCCAGGTGGTCAGCGGTCCTCTTCTTCTTCGAAGAGGCGGATGGCCGGGGGCTCGGTGTCCGTCGGTGGGACCTTCATGGTCTTGAGGGCGAAGGACATGATGTCGTTGAACACCGGTCCTGCGGCCTCGCCGCCGTAGTAGGTCTCCTGCGGGTTGTGCAGGACCACCTGGACGATGAGTTCGGGATCGTCGGCGGGGGCGAAGCCCGCGAAGGTCGCCGTGTAGCCACCGCCGTCGTAACCGCCGGTCTCCGGGTTGATCCGGTTGGCGGTACCGGTCTTGCCCGCTACTCGGTAGCCGTCGATGCGGGCCTGGGGCGCGGTTCCCTCGTCACTGGTGACCGCTTCGAGCATCAGGGCGAGCTGGTCGGCGGTCTCCTTGCTGACGACCCTGGTCTTCTCCGGCTCCTCCGCGGGGGTGAACTCCCCGTCGGTGTCGACGGTTCCCGCGATG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1760-2093 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000092.1 Nocardiopsis sp. SBT366 scaffold95_size21212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1760 29 100.0 32 ............................. CCGACCTCGACGGCGCGCTCGTGCCAGGACGC 1821 29 100.0 32 ............................. AGCGCGGACCCAGCCGAGCAGGCGACGCCGAC 1882 29 100.0 32 ............................. GCCGGGTAGCCGTCGTGCCACAGGGCCGTCCT 1943 29 100.0 32 ............................. TCGTCGAGGATCTGGAACGGGGTCCGGCCGCC 2004 29 100.0 32 ............................. CAGTTCACCGGCCCCAGCACATCCCACGTGGA 2065 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTAGGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGGCGAAGGAGGTCTGCGGGTGAGGGCTGCGTACCGCGCCCGGCCACGTGCGGACCCGTTCGGGAACGCGCCCCACACAGGTGCTGGGGGTGATCGCGGGGTCGGTGCTTCGGCGCGGATCGTCTCCGACCACCCCCGTGGCACGGCGGGTGCACCCAACTAGAGGGGTCGGTGTTGCCCATGGTCTGGGTGGGAACCACGAGGTTCCCCGCGGGCCCCAGCGCGTCCAGCAGGAGTGTGTCACCAGGGCGCACCCCCAGGCGCGCCAGGTGCAGGGTGAGTGAGGCCGCCGTACGCGGCCTGCCCGAGAGGTAAGGGGGAGTGGACACGGCGGCAGTCCGGTGCTGGTGGACACTTCGGGTCACTTTCCCAGCGCGAAGGTCCGCGAGGCCAGTCAGTTTCGCTCTCGGGCCCTCTCTGCCATGATGCGACTCCCGGAATGCCTGCCGATGCGATTATCAAGCTGAGATAACGGCTCGCGTTCCCGCAGGTCGCGAAGT # Right flank : GGGGTAAGGGGCTTTGCCCCCAGCCGCCTCGACGAACCCCGTACGCGGGAGCTGGCGGAACCTGGCTAGTCCAGGACTCGCATGACCAGGCCGGTGCGGGGCTTGGGGCCGAAGGACGTGGACTTGCGGGGAGTGAGTTCGCCCCGGTCGGCGACGGCGTAGACCTGCTCCACGTGCAGCGGGGGCACGATCACCGCCGTGCCCTTCTCGTCGCGGGCGGCGGCCTCGGCCTCGGCCGGGTCGTCATGGACCATCCGCACGTGTTCCTCGGGGAAGTGCCACAGGGGCAGGAGCACCTCGTGCAGGGCGGCCGTGGCCAGGTGGCGCCAGTCGGGGGAGCGGTCGGGCATGGCGCGTTGGAGCACGTCCTCGTCGAATCCGCTCAGCAGGTGGGCGTCGCCCTCGGCTGACACCAGGAGCAGGGCCGGGGCCTGCGCGCCCTCCAGGAGCGCGGGGTCTGCTTCGGTGACCGGCTCCACTCGGGCCACGGTTCCGGCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 10204-9807 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000125.1 Nocardiopsis sp. SBT366 scaffold129_size10671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 10203 30 96.7 31 .............................A CCATGTCTGGACTTCCCGCCGCTGCGCTCGC 10142 30 96.7 32 .............................A GTGATGTAGATACGTCTCAAGCTGCCTGCCTG 10080 30 100.0 31 .............................. AGGACGAGTACGAGCGTGTGGAGGCCGCGGC 10019 30 100.0 31 .............................. TCACGTCCTGCCCGCGCTGCGCCACCACGGA 9958 30 100.0 31 .............................. CGAGCCGGGGTGCGCCCGCCAGCCGGTAGGC 9897 30 100.0 31 .............................. CACGGGCCACGCAGCGGTTCCGGCCGGTGCT 9836 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 7 30 99.1 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : AAGGGCTTGTGGATAACCCGCGAAAGCTGCCCGGGTGTGTTATGTAATTCGTCCCAGACGGTAACCAGCCGCGACACGGGGCACCTTTGGGCGCAGGCCTGGGGTGCGGCCGCCCTCGCTGCCGCTGTTCCGGTGGCACGCGTGACCAGCCGCGACACGCAACCCGCTCCCCACAGGCCGGAAGACCTACCCTCCTTCGCTGCCGCTTTTGCGCCCACCACCCCAGCCACCACAACACGCGAAACGATGAACACCAGCCCTGACCCCGCACCCTCCTTCGCTGCCGCTCTTTCGTCGGGAAGCGTGACCAGCCGCGACACGCATCCCGGTCAGCGCAGGCGAGGAGGAACCCATCGCCTATAGGCTCGCCCGTGACAGCAACAACGAAGGCGGATGCCGGTTTTGTCTGTTTCTCAACAAGTTGGAAAAACGAGCACTTACCACCGGTAAGTCCGCAGGTCAAAAAG # Right flank : GCGGCCATGACTCCGGCCCAGGCGGCGAGAGCCTGCTCCCCGCAGTCACGCGGGGCCCTCCTATTACTGAGCGACGGCTGCGCGGGCTCGGCGACGGACGAAGACCACCAGCACACAGGTGGAGAGGAAGGTGGCGACGGCCATCGGGGTGAATGCCCATTGGTAGGAGGTCGGATCCTCTGGCAGGGCCTGGAGGAGGGCTCCGGCCGCCACTGTGCAGATCACGGCTGTGGTGAAGCCGCTCATGTTGACCAGACCGGAGGCGACACCGGTCCGGCTGGCCGGGATGCCGTCGCGGGCGAAGTCGAAGGAGACCGTGGGTGCCATGGTCTGCCCGAGGGCGCTGACCGCCAGCACCGCCACACCCACGGCCACGGGGGCGCCGCCGGGCCAGGCCACCAGGAGCAGCCAGCCCAGGCTCAGGATGCCGCTCAGGGTGAGGGCGAAGTACACCCGCACCCCGGGCCAGCGGCCGACGAGGAGACCCGCGACCGGGGCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25429-24423 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000011.1 Nocardiopsis sp. SBT366 scaffold12_size87803, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25428 29 100.0 32 ............................. GCGCTCAAGCTGCGAACGCTCGCCGCGTCCAC 25367 29 100.0 32 ............................. CGTCCGAGGGTGAGTTGCCGCCGGTTCTCGCT 25306 29 100.0 32 ............................. GAGTGCGTCTGCCGCGGCGACAGAACACGTTC 25245 29 100.0 32 ............................. GACGTGATCCGATGACCCGCCTCACCCCGGGC 25184 29 100.0 32 ............................. GCGGTTCAGTCTCAGATTGAGGCCGCGCCGGA 25123 29 100.0 32 ............................. TCCGAGAGTCAGAGAATGACCCTGGGGAATCC 25062 29 100.0 32 ............................. AGGACCCGACCGTGCTGGCCGGTTTCCTCCTG 25001 29 100.0 32 ............................. ATGGTCGAACTCGTCCACTACCGGGGCATCGC 24940 29 96.6 32 ............................T GCGGTCTTGACCGCCTCTGCGACTTCGTCCGT 24879 29 100.0 32 ............................. CGCCCACTGGGGGGTGCGGGCGAAGAGCCACC 24818 29 100.0 32 ............................. GAGGGCCGGTTGCAAATGGCCCGTCTGATGGC 24757 29 100.0 32 ............................. GCGCCATGCGTAGGCCTGAGCGGTGTTACTCA 24696 29 100.0 32 ............................. GGCCGGTGGGAATACGTCTCCCCCCTCCCCCA 24635 29 100.0 32 ............................. GGTCAGCAGGTGGGGGCGCTGGTCCCCCTGTC 24574 29 100.0 31 ............................. GCCGCCCCTCACGGCCGCAGGGTGCACCTGC 24514 29 100.0 32 ............................. GTCCCCCGCATGTGCACCTGCCCGTCGGGGGT 24453 29 96.6 0 .........................C... | GC [24434] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : ATGACGGTGCTGGCCCTGGAGGGGTCGTTCGCGTCGGTGCTGGGCGGCGCTCCGGCCGCTGCGGTGGTGTTCGCCGGTGAGGTGAACAAGCGCACCGCGACGGACCCGCGAGTGACCGAGCTGCAGACCCGGGTGTCGGAGGCCGGTGCCGCCGAACGCGCCGAGCTCAACGCGGAGCTCTCCGAGGTGCAGGCCTCGGTCCGAGCCGAGAAGCTGAGCGAGGTCGCCACGGAGTTCGACGGCGTGCACAGCATCCAGCGCGCGGTCGAGGTGGGCTCGGTCGACGCCATCATCCGCGCCGCCGAGCTGCGCCCGAGCATCATCGACGCCATCGCCAAGGGCATGAAGCGCTAGACGGCACGGAAAACGGCCAGCCCCGTTCTGGGGGCTGGCCGTTTTCCGTGTGTCCGTGTGGAATGATGTCCGCCAAGCGTCCGCAGAAACGAGTCAGGCGATTATCAAGCGGAGATAACGGCCCGCATCGCCGCAGGTCATCAAGC # Right flank : TGCTCGGTGTAGAAGAGTTCGGGGGCGTGTCATCGCCTCGGAAACGCGGGTCCATCAGGCGGGTGCCCCCACCACCCGAACCGGTGGCGGGGGCTGGTGCCTACTTCGTGTCCTCACCGGCGGGGAGCGGCAGCGGGAGCGCCGGTGGACCGATCGGCAATTCCCCCTCCAACGCCCTCCAGGCCGCCGCCCACCGCTGGAAGTCGGCGGACGTTCCCTCAAGAGCGACGACGAAGGCGTTGAGCAGGGCGAACGTGGGGAGCCTGTCGGATCGGAGGGCCTCGCAGAAGCGGGACGAGGACCTCACACCCACCCGGTCCGCCATCACCCTGAAGGACGGCGATCCGGCCCAGCGCCGGTACTTGTTCATCAGTTCGATGAACTCGGGGACGCTCTTGGCCTGCACCGGGTCCGGCTTCATCCCGGCACCGGGCAGATCCTCGGGAACCTCGGGTACGAATCGCGCCTGCACGAAACTCCGCTCAGTCGGGGACCAGATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 67283-65851 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVM01000014.1 Nocardiopsis sp. SBT366 scaffold16_size82247, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67282 29 100.0 33 ............................. ATGCTCTACCCACCCAGCCCCTTCCGCCCCGTC 67220 29 100.0 32 ............................. CCACTCCAGATCCACTCCAGATGACTCCAGGG 67159 29 100.0 32 ............................. ACCCCGCCATGAACACGAACCCCTGGGCCGCC 67098 29 100.0 32 ............................. GATCTCGGGATCGCTGCTGCGCCAGCGGTTCG 67037 29 100.0 32 ............................. ATCGTGCACACTCCGAGTCATGTTCAGTTCCT 66976 29 100.0 32 ............................. ACGCGTGTCAAGACGTCGAAGCTCGTGCCCCG 66915 29 100.0 32 ............................. CCGTCCGTGACCAGCTGGCCACGGTGACCGTG 66854 29 100.0 32 ............................. ACGAGGTCAGCCACGGCGAGCCCCCCGACGTC 66793 29 100.0 32 ............................. GGAGACCGTCCTCGTAGGTGCCCAGCTCCAGC 66732 29 100.0 32 ............................. GGCTCAGCCGGTGGTGGTGAGCGCGGTGATGG 66671 29 100.0 32 ............................. GCAGCGGCCACGACCGAGTTGCCCTCGTCGGT 66610 29 100.0 32 ............................. TCCTCGATCGTGTCGACCCGATGGCAGAGCCG 66549 29 100.0 31 ............................. TCCGCGAGCTGGAGAGCCGGTACGTCAATCC 66489 29 100.0 32 ............................. AGTGAGAATCCAGTGGTAGTCCATGTCACTCC 66428 29 100.0 32 ............................. GCGCACGCCGCACCCACATGGCCGCCTGGGTC 66367 29 100.0 32 ............................. GCGGACGAGCAGTAGGCCGAGCCCTGCACACG 66306 29 100.0 32 ............................. TTCCATTCAGGATGACGTGGGGACCGCTCGCC 66245 29 100.0 32 ............................. GAACTCGAAAGCGGCCCAGAACCATTCGTGAT 66184 29 100.0 32 ............................. GCGCCTGCTTCGCAGGCCCGATTCCCCGGATC 66123 29 100.0 32 ............................. GGCAGGAGGAGGCGGCCCCTCCGCCGCTGCCT 66062 29 100.0 32 ............................. GGTCCTCCAGGAGGTAGGGGGAGTAACACCCA 66001 29 93.1 32 ........A...................C AATCCACAAAGATAATCAGAGGGCGCCCGGAC 65940 29 100.0 32 ............................. GACCACCAGAGGCCGCCCCGGCCTCCGCAGGC 65879 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GACCGGGCTTCCAAGGGACTGGGGATGCGCCTGGTCGAGGCCCGCGACGGGTACGCGGTGGTGGAGATGGTCGTGGGGCCCCTGATGCTCAACGGCTACGACATCACCCACGGCGGGTTCGTGTTCGCGCTGGCTGACACCGCCTTCGCCTGCGCGTGCAACCTGGACGGCGGCGACGTCACGGTGGCTTCGGGCGCGGACGTGACCTTCGTGGCCCCCACCAGGGAGGGGGACCTGCTGGTGGCGACCGCCGAGGAGAGGGTTCGGTTCGGGCGCAGCGGCGTCTACGACGTCACGGTCCGTCGGGGTGACCAGGTTGTCGCGGAGTTCCGGGGTCGAAGCCGGAGTCTTCCGCAGAGGAGTTGATGGTGTGGGGGCCGGGGTTTGGGGCTAGGGACTGAGGGTCCCAGGGCCCCGGCCTCTGACATCATGTGCATTAGATGTGCGGCTGTGAAGGTCAAGCGGAGATAACGGCCCGCGTTGTCGCAGGTTCATTAAGC # Right flank : ACCACCCCCATGCCCCAGCAGGCCGCCGCGTGGTGAGGGTGGCGTTACAGCACTGGCTTGTCTCGGTCCGCCTTCAGATCCGACTTGGTAGGACTCGCTGCATATCGCGCCCAGAGCGCCCAGAGCGGCACGGAAGCAGTCAGCGGGATCAGCGCCATCACCATGGACCGGGCCCGCGCGTTCATGCATATCTCATCCTGGACCAAGGCCACCCCCTCTCGGTACGTGTAGAGGTTCGTGGATGGGCAATCAGGGCGAGGCGTTTCCAGCACGATGGCGGGTTGAGGGGGTGGGGCCAGCAGCATCCAAATGGTGATGAACCACAAGAGCAGCGCCCGTATGAGGACAAAATTGTGAAACTTCAAGACGGTCCTGTCGTTGGAAGACGGGCCACCGAAGAATTTCATTCCTGTATTTCCATGTCATCCCTTTGGCCCGATCTGGTCAGTCAGGTTTTGAAGAAAGGTTCACCCCCATGACCCCCAACAGGTCGCCGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //