Array 1 786494-786011 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041968.1 Streptococcus sp. KS 6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 786493 36 100.0 30 .................................... CCGTTTTCAATTATCGTTTCAAAAAATGTA 786427 36 100.0 31 .................................... TATTTAGCATAAGAGCACAATGAAGAAGCAA 786360 36 100.0 21 .................................... TGCTAAGAATAAGAAGCATAT Deletion [786304] 786303 36 100.0 26 .................................... TAGCAAGGAATATAAGAAGCAAGGAA 786241 36 100.0 28 .................................... TTATGAGCACAATACTTAAAGCCCAAGG 786177 36 100.0 30 .................................... AGTTAGCATAAGAGCACAATGAAGAAGCAA 786111 36 100.0 29 .................................... TGCTTTTGAAAAAATAAAAAGATTATTCT 786046 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 28 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ACGATTACTTAAGTTATTCCTCATTTGTAAAATGTTGTGAGCAATTACAGAGAATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATGTTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTAGTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATAGTAACCTTGAAAATTATGAACAGTTTATACCATTATAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TACATTAGGAATTGTTTGATGTAAAAGAATTGTAATCTAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGCTGAAATGGTTTATAATGAAAAGTAGCAAGTATATTAGGAGACCGTCTAATGGAGAGAAAAATTAAAAAATCGGTAGTTGCGACCGGTTTAGCTGCAACCACTATTATTTCAGGCAGTTTATCACATCAAGTAAATGCCGAAGAAGTAAAAACACAATCTACTAAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGTTGCAAGCCGATGCTACAAAGGTTCAGACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTTAAAGGGGATGTAAATACTTCAAAGGACGCGGTAGCAGATAGCGAAAAAGCTGTTGCAAATGCTAAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCGACATCAGAGAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1395847-1394883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041968.1 Streptococcus sp. KS 6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1395846 32 100.0 34 ................................ AATAACTTGTTTCCCATTCTCAATCTCTTTTTTA 1395780 32 100.0 33 ................................ TCAGCACCACCGATATTACCAATGATCCCAGCA 1395715 32 100.0 35 ................................ TAATATGGTCTTCATCAAACAGAATATCATTAGTC 1395648 32 100.0 36 ................................ ACCTTATATTAATGAATGGAATCTCAGTTCTTTCAT 1395580 32 100.0 35 ................................ TCGTCGCCATGCAGGCTGTAGAGAATGACGTCGCC 1395513 32 100.0 34 ................................ TTTTGTAGCAGGCGCTTCATTTAGCCACGCGCTT 1395447 32 100.0 36 ................................ CTTGACTTCGGCGTTAAAGCCGGGTCTAGTGGAGAC 1395379 32 100.0 36 ................................ ACCTTATATTAATGAATGGAATCTCAGTTCTTTCAT 1395311 32 100.0 35 ................................ TCGTCGCCATGCAGGCTGTAGAGAATGACGTCGCC 1395244 32 100.0 33 ................................ TCAGCACCACCGATATTACCAATGATCCCAGCA 1395179 32 100.0 34 ................................ AAAGCTGGCATTGGAGCAGATTTATCAAGATAAC 1395113 32 100.0 33 ................................ ACCTAATCTCATTCCAGTAACAGCAAGCAAGTA 1395048 32 100.0 35 ................................ AAAAAGTGGGCTGAAATACATAAGAAGCCGCATGT 1394981 32 100.0 35 ................................ TTTAGAAACCGAAGTTTCAGGGATAGCACTGCAAC 1394914 32 96.9 0 ................A............... | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 99.8 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGAGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTACTGCAGGTAGGAGACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCCGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAATTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTACTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTGGTTTTTATTAAATGAAATAGCTCAATAAATTCTTAGATTTAGTCACAAACGGTGCAACCATGCGCT # Right flank : TTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCGAAAGTTAGGTTTGGATAAATAGAGAATCAAACTAACATCTGAGGGCAGAAAGGTTCCAACTATACATATCTGAAGTAGAGTATCTGAAATAATAAAGTTCCCTGTATTTCCAACAAATAAGTCAACATTACTTCAACAAAAAAGCAGCTCAACAGTAGAGCTGCTTTTTTAACCTATTTGCAAGTTTAAAATTGTGATTGGTCTTGCATTTACGGATGATCAGACATTTAAACTTCAATATTATAAAGATCTGTTGATAAATAGCGCTCACCGTTATCTGGGGCAAGAGCTAGAACTTTTTTACCTGTTCCTAGTTTTTTGGCTACTTCAAGTGCAGCATAAATAGCTGCAGCAGAAGAAATACCTACCAGAAAACCTTCTTGTCCACCGATACGACGCCCAAGTTCAAGTGCTTGATCAGAAGTAACGCGAACAATACTGTCGTAAGCTTGAGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //