Array 1 125990-124741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBQ010000001.1 Escherichia coli strain CW1R NODE_1_length_236943_cov_47.708318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125989 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 125928 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 125867 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 125806 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 125745 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 125684 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 125623 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 125562 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 125501 29 96.6 32 ............G................ ATTTCATCAAAGCATTAAGGGATGGAATAAAG 125440 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 125379 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 125318 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 125257 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 125196 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 125135 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 125074 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 125013 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 124952 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 124891 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 124830 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124769 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152709-151539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBQ010000001.1 Escherichia coli strain CW1R NODE_1_length_236943_cov_47.708318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152708 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 152647 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 152586 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 152525 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 152464 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 152403 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [152377] Deletion [152363] 152361 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 152300 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 152239 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 152178 29 96.6 32 .............G............... CCATGACTATAAAAGCTTATATTTTGATAAAT 152117 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 152056 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 151995 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 151934 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 151873 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 151812 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 151751 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 151689 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 151628 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 151567 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //