Array 1 888405-890816 **** Predicted by CRISPRDetect 2.4 *** >NC_018406.1 Mycoplasma gallisepticum VA94_7994-1-7P, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 888405 36 100.0 30 .................................... AATCGAATAATTATGTTCAGATGTACTTTG 888471 36 100.0 30 .................................... GAAACGGCCGCAAGTTACTTACATACAATT 888537 36 100.0 30 .................................... TTTGCATATTTAGATCGTTACTTTGACAAA 888603 36 100.0 30 .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 888669 36 100.0 30 .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 888735 36 100.0 30 .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 888801 36 100.0 30 .................................... TTTTTTCAAAATTATACAATAACGATTTAA 888867 36 100.0 30 .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 888933 36 100.0 30 .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 888999 36 100.0 30 .................................... AAGTAACTTGCAGCCGTTTCATGATCAAGT 889065 36 100.0 30 .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 889131 36 100.0 30 .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 889197 36 100.0 30 .................................... AAATAAGGGATATCAAACGACATATTATGC 889263 36 100.0 30 .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 889329 36 100.0 29 .................................... ATTTAACAAAGAATGAGATCGAATTGAGT 889394 36 100.0 30 .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 889460 36 100.0 30 .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 889526 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 889592 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 889658 36 100.0 31 .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 889725 36 100.0 30 .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 889791 36 100.0 30 .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 889857 36 100.0 30 .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 889923 36 100.0 30 .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 889989 36 100.0 30 .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 890055 36 100.0 30 .................................... TAATTAATCGCGATAATACAATGTATTTTG 890121 36 100.0 30 .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 890187 36 100.0 30 .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 890253 36 100.0 30 .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 890319 36 100.0 30 .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 890385 36 100.0 30 .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 890451 36 100.0 30 .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 890517 36 100.0 30 .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 890583 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 890649 36 100.0 30 .................................... ATGGTGACGAATATAAACCCCAACTTGATC 890715 36 100.0 30 .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 890781 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 37 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTTTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //