Array 1 426-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHJ01000012.1 Moraxella catarrhalis strain COPD_M52 NODE_12_length_440_cov_0.936102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 425 28 100.0 33 ............................ AGATGACCAACCACCGCTTGCCAAATTTTCCAA 364 28 100.0 33 ............................ GTTATCAACGACAGCATATTTTTGGCGGTTGTA 303 28 100.0 33 ............................ AGTCAAATTCACCACGCCAAACACCGCCATCAT 242 28 100.0 32 ............................ ATTAACCCTAGCTCTATCGCCGTCAATTAGCA 182 28 100.0 32 ............................ GTCATAATGTTTCATTACTGCAAGTACTAATC 122 28 100.0 32 ............................ TTTTAGGCAAGGCGTGAGCCTTTTAGGCAAGG 62 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GATCTTCTTTAGAA # Right flank : ACATACTCGCTCATAAGCTTCAACCCCTGCTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 64950-61413 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHJ01000003.1 Moraxella catarrhalis strain COPD_M52 NODE_3_length_349386_cov_44.1447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 64949 28 100.0 32 ............................ TGGTTGCTATTATAGGGTATCTTACATTAAAA 64889 28 100.0 32 ............................ TACTGTTTGCAGTTTAACGACTTTGCAGGGGC 64829 28 100.0 32 ............................ CAAAAAAAGAAGTTTCGGTGATTAAGGCCCAT 64769 28 100.0 32 ............................ TGTCAAGTTTTGGCGGTTTTGGCTGATTTCAA 64709 28 100.0 32 ............................ GCTGGCGGACGGTGTTGATGTCTTCACGACCG 64649 28 100.0 32 ............................ GGACCATTTCCAGCCAACCTTGGCATGATGGC 64589 28 100.0 32 ............................ ATCTACAAGACCATATATTTCACCCTCTGATA 64529 28 100.0 32 ............................ GCCATCACGAATGGACGATGAATAGCAGTGAT 64469 28 100.0 32 ............................ ATCAGGAAAGTTCGGCTCGCCATTGTCGTTAA 64409 28 100.0 32 ............................ ATTAAACAGCGACTTTCAAAAACCCACAGTAG 64349 28 100.0 32 ............................ TTAGCGTACAGGGGGTATTATTTGGCATGAAT 64289 28 100.0 32 ............................ GGGGTCAAGATTGGGCGTTGGCATTAGCAGAC 64229 28 100.0 32 ............................ TGTTCATCAAGAAAGGTTTTGATGGGCAAGAT 64169 28 100.0 32 ............................ ATCTGATGCTTGCCTAATTGCCGATAAACTCG 64109 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 64048 28 100.0 31 ............................ ATCCTGCCACCACTGTATCCAGCCCATTGTC 63989 28 100.0 32 ............................ TTGCACCAACACCGCTCATGACAATGAGCAAT 63929 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 63869 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 63809 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 63749 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 63689 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 63629 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 63569 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 63509 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 63449 28 85.7 0 .......................CTTC. - Deletion [63422] 63421 23 82.1 32 -----....................... GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 63366 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 63306 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 63245 28 100.0 32 ............................ AGCCACAACACCAAGTGCACCCCAAAGATCAT 63185 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 63124 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 63064 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 63004 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 62944 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 62883 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 62823 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 62763 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 62703 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 62642 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 62582 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 62522 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 62462 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 62402 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 62340 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 62281 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 62221 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 62161 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 62101 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 62041 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 61981 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 61919 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 61860 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 61800 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 61740 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 61680 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 61620 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 61560 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 61500 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 61440 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================== ================== 60 28 99.3 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //