Array 1 101519-100452 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLA01000001.1 Escherichia coli strain MOD1-EC6810 MOD1-EC6810_1_length_395280_cov_30.6375, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101518 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 101457 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 101396 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 101334 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 101273 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 101212 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 101151 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 101090 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 101029 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 100968 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 100907 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 100846 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 100785 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 100724 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 100663 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 100602 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 100541 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 100480 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118638-117023 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLA01000001.1 Escherichia coli strain MOD1-EC6810 MOD1-EC6810_1_length_395280_cov_30.6375, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118637 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 118576 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 118515 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 118454 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 118393 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 118332 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 118271 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 118210 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 118149 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 118088 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 118027 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 117966 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 117905 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 117844 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 117783 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 117722 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 117661 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 117600 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 117539 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117478 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117417 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117356 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 117295 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 117234 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 117173 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 117112 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117051 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATAGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //