Array 1 2180280-2172671 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018281.1 Chondrocystis sp. NIES-4102 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 2180279 37 100.0 35 ..................................... GTTAAGTAGGATTTTCTGCTTAAGGGCAGCTTCAG 2180207 37 100.0 34 ..................................... TTTGCCCAAGCAATCTTTGCTCACGATCACCTAG 2180136 37 100.0 45 ..................................... GAGAGCTGCTAGAATGTTTTGGCAAGGCGATCGCCTGTGGTTAAT 2180054 37 100.0 36 ..................................... AGGGGGACTGAGAATAAAAGGCCTGGGAATTAATAG 2179981 37 100.0 40 ..................................... TTAGTTTCAACCCGAAACTTATAAGCCCCGTTGGGGTCGT 2179904 37 100.0 41 ..................................... CCGCTTGTTGAGACCTGGGATGCGGTTTCTGATGTAGCCGA 2179826 37 100.0 39 ..................................... AGGAGCTACGATGATTAACACTTGGAGCGCGGTTTTCGG 2179750 37 100.0 44 ..................................... CTATTGTCTTTTTGTATAGCTGACAAGTCGGCTAGACAACTAGG 2179669 37 100.0 34 ..................................... GTTTAGAGGCAATATCTGTGAAACCCCACCTATT 2179598 37 100.0 37 ..................................... TTGGTCTATTGATCGTGAGAATTCTAATACTTTGCAA 2179524 37 100.0 35 ..................................... TTCTTATCGCATTCCTGTAGGTTGTTAAACGATTT 2179452 37 100.0 38 ..................................... GAATATTTGGGAATATCGAAAAAAATCTAGCGATCAAT 2179377 37 100.0 35 ..................................... TACTATTGATGGGTTTGATGCCAAATGTGGCGAAA 2179305 37 100.0 35 ..................................... ACCCAGTGGTTTATGCGAGATAATGAGATTATAGA 2179233 37 100.0 33 ..................................... GGGATGAAAAGCCTGTGAGCTTTGCGAACAAAT 2179163 37 100.0 34 ..................................... CAAAAAGATCTTTCACTTTTACTAGATTTTTAAA 2179092 37 100.0 37 ..................................... AAAAATCTTTAAAATCCTTAGCAACTACAGTAGGCTT 2179018 37 100.0 34 ..................................... AATATGTATTCCCTCGTACATCTTTATAGAGTTA 2178947 37 100.0 34 ..................................... CTCAGCTACCAACAGATAATTCAGGGCATATGGC 2178876 37 100.0 36 ..................................... TATATATACGGCCCTAAAGATACTCTTATTACTACT 2178803 37 100.0 35 ..................................... ACAGATTTGAACAAAGTAAAAAGATATGTGGGTAT 2178731 37 100.0 39 ..................................... AAATGATTTTTTAATATGTGCAAGCGATTTCGCTTCAAT 2178655 37 100.0 35 ..................................... TTCACGGTCAAGCCAAAAGTAAGCACAATGTTTAC 2178583 37 100.0 40 ..................................... AACGTAACCAACCACCTTACATTAAATAAATTTATTGGTA 2178506 37 100.0 37 ..................................... TCCAAGTTTGGGCTTGCAATAAGTACCCAAAATGCAG 2178432 37 100.0 39 ..................................... TATATAGTAAATAGCAGGTATGCTTTGTCAGTTTCCTAT 2178356 37 100.0 35 ..................................... TGTATTTAGTAATGCAAAAATGACAAAATTCTAGA 2178284 37 100.0 48 ..................................... TATGATGAACCACAGTAGTAATAAGAGTATCTTTAGGGCCGTATATAT 2178199 37 100.0 38 ..................................... TATGATGAACCGTTTCTCGCAATGTCTCTATTTGCGAT 2178124 37 100.0 38 ..................................... CTAACCCAATCAATAGAAGTATTAACTTTTACATTTTG 2178049 37 100.0 37 ..................................... TGATGAAGAGATGCCATACAACCTTTTTACAGCTATA 2177975 37 100.0 39 ..................................... AGAAATTCGCCTTTCGAACTTAATCGTCAAAAAATTATT 2177899 37 100.0 37 ..................................... ATCTTCTAGTAAAGCTCTAATTTTAAATGCACCCCAT 2177825 37 100.0 34 ..................................... TCGGAAGCTGATCTTACCGCGCTGGGACACGTAA 2177754 37 100.0 34 ..................................... TTTATATAAATCTCCATTCGTAGATATATATTTT 2177683 37 100.0 39 ..................................... CGAGCGGATAATTATTTACTCGAAGCACTATCCCCAGAT 2177607 37 100.0 35 ..................................... AAGCTCCGAAGCCAGGAAGAGCTAGAAAAATCATC 2177535 37 100.0 35 ..................................... GCTCAGACTGCACCCCTCGCTTGCTTTTGTAGCCT 2177463 37 100.0 34 ..................................... GGACTCATGGGTGATGCAACAAAGGCAAATCCAA 2177392 37 100.0 35 ..................................... ATGTAATTGTTGGGCGTGTTCGATGCCTGGTTTAT 2177320 37 100.0 37 ..................................... ACAATTGAAGAAAATGATGATAGTGAAACATTAGAAA 2177246 37 100.0 36 ..................................... GAAATTACTCTTGATCAAGAGGAATAATATCCTCTA 2177173 37 100.0 41 ..................................... TAATTTCTGCTGCATCCGCAGGAGCAAGAGCCTATCTATTT 2177095 37 100.0 35 ..................................... AGGATGATTAGGTGTAATAATCAGAGCCATCTATT 2177023 37 100.0 36 ..................................... ATGTAACACTTGCCGAAGTAGGCACTGCGGGATTAT 2176950 37 100.0 35 ..................................... GTACCTAGCCCATATTCCCGATAAGTTGTAGTGGG 2176878 37 97.3 49 ....A................................ TAAAAAAACCCTCTCAATCTAATCGGTTGAGAGATTTTTCTTTTTTGCC 2176792 37 100.0 35 ..................................... CAGTAGGCAGTGCGGAAAGATTGAAGCTCGTACGT 2176720 37 100.0 36 ..................................... TAAAAGATTCCAATTTTTACGAGATCCATAATGATC 2176647 37 100.0 34 ..................................... TTAACGTAGATGGCGACTTGCCAACAAGGCGAGC 2176576 37 100.0 34 ..................................... TCTTAGATCAAGTATCTCTGCTCTAAATAAACAA 2176505 37 100.0 38 ..................................... TTGATTGATCATTTTCATTATTAGATAGCATTTGAGCA 2176430 37 100.0 34 ..................................... ACAATCCCCATAAAGGAAGCTGCTGCCCTAGCTG 2176359 37 100.0 37 ..................................... GCATTTAAATCTTGGCATTCATCAATAAGAATAAAAT 2176285 37 100.0 35 ..................................... AAGCAAGGTGAATTTCTTGTATTTGTTTTTTTAAG 2176213 37 97.3 35 ......................C.............. CACAGCATTAAAGTAATTTGTGGTAGAGTCAATAG 2176141 37 100.0 42 ..................................... TACGAATGGATAGAATACCTGAGAATTCACAAATACTTGCAG 2176062 37 100.0 41 ..................................... TATTATTTACTGCAATGAATAATTACCAAATAATTTCGGAT 2175984 37 100.0 35 ..................................... TCGCTGTATTTTCTATATAATTATCATCTTTTGAA 2175912 37 100.0 38 ..................................... TACATCGATAGATCCAAGAAAACGTGGGTAGGGTGCAA 2175837 37 100.0 39 ..................................... CTCAATATTTCTAAATTTGTAAGGCGCAATGGTGATAAA 2175761 37 100.0 37 ..................................... ATTCTTCTGAATTGAATATCTACTTGCGACCAATCCT 2175687 37 100.0 37 ..................................... TTCCGAAGGGCGATCGGAGCAAACCTCTTATATATAT 2175613 37 97.3 35 ....A................................ TATTCCAATTTGATCCGTCCCAGAAATTTTGCCAT 2175541 37 97.3 35 ....A................................ CGAGTACTTGCCATCCTGGTTAAAGCCCCGTATTC 2175469 37 97.3 36 ....A................................ CAAATCAAATGGTTGGATAAAAAAAGAATAAAAATC 2175396 37 97.3 36 ....A................................ AATTCAAGTCAAAACGATTAATTATAGATTAAGCAA 2175323 37 97.3 35 ....A................................ AAAAAGCTTATTAAGACAGTACTCCTGTGATTTGC 2175251 37 97.3 34 ....A................................ GCGTTTGACATATTTTGAGCAAATAAAATACGAA 2175180 37 97.3 39 ....A................................ CAAGATATCAATTCTGAATTAAAATTTAAAATACCTGTA 2175104 37 97.3 35 ....A................................ TATTCCAATTTGATCCGTCCCAGAAATTTTGCCAT 2175032 37 97.3 38 ....A................................ TAATTTTGAGGATTGGAGAGAATTATATTTAGACTCAA 2174957 37 97.3 33 ....A................................ AGCAATGCAATTGTAAATTAAACAAATTATTGA 2174887 37 97.3 35 ....A................................ TATTCCTATTCGGATCTAAAACTTTTAAAAGACTT 2174815 37 97.3 41 ....A................................ TTAAATGTTATAACTTCCTCTAAAATCAAATCGTACAACTT 2174737 37 97.3 34 ....A................................ TGTTAATTGTTGCCTTATCCAATAGCTTACTCAT 2174666 37 97.3 31 ....A................................ AGTAAACTCATAAGAACTACATTCAACACAA 2174598 37 97.3 36 ....A................................ AAAGCTACTAGTACTTCCAGTTAGAGCTTCATAATG 2174525 37 97.3 40 ....A................................ AATCCAAAGTAGACGATTCTTTTAAACCTCGGATTATTGC 2174448 37 97.3 35 ....A................................ TTTGCACAATTAGGTTGGCGCATACAAGCATCTAA 2174376 37 97.3 48 ....A................................ ATCTATTTGAATAGCGATCGCTGTGGAAGTGAAATTCACTTGCATCCA 2174291 37 97.3 34 ....A................................ TCGCTCAGAAGTGCGATCGCTGATAACATCACCT 2174220 37 100.0 36 ..................................... ATTTGCAATCCTCCGTGGATTTACTTATAATGGGGA 2174147 37 100.0 37 ..................................... AGGTATTTTCTTAATCTTTCTGCCTGATTCTCTGCTT 2174073 37 100.0 34 ..................................... GAATTAGAGCTAGATATCTCGCAGGACGAACTGT 2174002 37 97.3 36 ................................A.... CTCGCCAATCAAAACTCACGCTGTAGTAAACGCCCT 2173929 37 100.0 33 ..................................... TGATTTTTTGGGAACAATAGAGACAACAAAATT 2173859 37 100.0 37 ..................................... AAATAGACATCCCTATCTACTTTATTACTTGGCAGGT 2173785 37 100.0 37 ..................................... GAGATTAGGCTTGTATCGTACCTCGCTTGGGGGAAAA 2173711 37 100.0 37 ..................................... GAGATTACAGTGAAGGGGGAACAATCGGCATGAGCAA 2173637 37 100.0 36 ..................................... GGCAAACATTGTAGCGAAAGAGCCGTAATAACTATA 2173564 37 100.0 35 ..................................... CTTTCTCTGGTTGTGGCTCTGGTTCTTGGGGTTCG 2173492 37 100.0 34 ..................................... TCAATATTTATTGTTGTTGTTGTTTTGTTTGAAG 2173421 37 100.0 36 ..................................... TGTTGTAATTCTGACAATTGGGCAATCGCTTCTTCA 2173348 37 100.0 33 ..................................... AGATTTTTTACTCTGGGCTGAAAACGATTTTAA 2173278 37 100.0 34 ..................................... AGCAGATATTCCAAGTGAACTAATAGAAAAACTT 2173207 37 100.0 36 ..................................... CGATACAGGTGGCATTTGGTTGGCTACTGTAAATCG 2173134 37 100.0 39 ..................................... GCGCTAACCAATCTAGCCACCTATTTGCTTCTCTATCAT 2173058 37 100.0 33 ..................................... ACAGGAGAAGAGAGAGCAGATAGATGTATTCTT 2172988 37 97.3 37 ......................C.............. CAAAACCGAAAGACCAACTCGGAATAGTGAAAGCCGT 2172914 37 91.9 33 A...A.................C.............. CGATTAATTGTTCATATAAAGGATTAAATTTAC 2172844 37 97.3 38 ......................C.............. ACAGGAATTAATTGCGATGGCTAGTTCTAAGACTACAT 2172769 37 97.3 25 ....A................................ TAATTATGCTCTAGGCACTAGGAAG Deletion [2172708] 2172707 37 89.2 0 ..A.A......T..........C.............. | ========== ====== ====== ====== ===================================== ================================================= ================== 104 37 99.2 37 GTTTTAACTAACAATTATTCCTATGAGGAATTGAAAC # Left flank : ATAGTCAGTTACGATATATCGGAAGATAAAAGACGCAATAAAATCCACAGTATATTATCTTCTTATGGTCAATGGATGCAGTATAGTTTGTTTGAATGCAATTTAAGCAAAACTGAGTATGCTAAATTGCGATCGCGTCTTAATAAAATAATTGATTCTCAAACCGATAGCATTCGTTTTTATTTTTTATGTGGCTGTTGTCAAAATAAAATTGAGCGTATTGGCGGTGAAGTAGTTAGAGACGATACATTTTTCTTGGTTGAGTAGGATTTTTGCGCGGTTGGGTAGATGTAGAAAATGAGTAAAGTTATAAATTATGGGAAATTATTCCCCAGTATGGCTTGGGGGGCGATCGAGATAGTTATTGTTCCGCGCACTATACAAGATAATGGTTTCAGCTATTTTGGCTCTATTCTTCTTGTCTTTTATGCTATCATCGACCCAGTATAGCGCAAACGAACCTTGAAAACTAAATATATCAATGTTTTTGAGCTACCGCC # Right flank : AATAAACAAATCTTGGGTAAGATTAATTATTTAATTTTATAAGATGCAATTTCTAAGACTGGCCCAATCATCGCCATTGTCATAATATCTTTACGAATCTTACCTTCAATCTCTACTTTTATTCCTTCTTTTTTTAATTCGGATGGGGGATCTTTTAACTCGTAGGTTGTGCCATCATCTGCTACTAATGCCCAAACCCCAAAACCAAATCCTTTTTTCTCGATTTTCCCTGTAACTTTCATAGTTTTTGCTTTATATAGTAGAGCCTATAGTTATAACGATGATCTAAAAATATGCGTAGTAGTAGATAGATGTTTTGTCTCTTCTATTACTACGTCTTATGATATATGATTGAGTCGCTTTGCCTTATATTTAAATGTAAAATATTAAGTGCAATTTTAAACAGAAATCATATTAATTGATCAGCAAAGCAAAAACGTTATAATGCCCCTGCTGCCGTTTTATCAATAATACTGCCATCTCCTAAGTGAGTGGTAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTAACAATTATTCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 3565216-3562560 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018281.1 Chondrocystis sp. NIES-4102 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 3565215 36 100.0 40 .................................... ATCGACCAATAGCGGAATTGGTCATCATTCATTCCTTCAA 3565139 36 100.0 42 .................................... CAGACATTATTTATACGATGTCAAGCCTATTCAGGGAATAGA 3565061 36 100.0 41 .................................... TTTGCAAAAGTTCAGAGGGTAACTGGGCTATAATAGCTACT 3564984 36 100.0 42 .................................... CTGATGGAAATATGTTCGACACTGCAAAAGCTATAACAAAAA 3564906 36 97.2 38 ...............................C.... ACAAATGTATTATAGCTATTAATTTTAATTTGTTTTAC 3564832 36 100.0 39 .................................... AAGTACTTCCTGGTTTTACTAGGTTAAAAGTATAGATTT 3564757 36 100.0 36 .................................... TTTATATAGCTGTTTTGTATTTCTTGACGAGTTAAA 3564685 36 100.0 39 .................................... AAATATAATCCTAAAGCAAAGGTCAATAAAGGTACTAAA 3564610 36 100.0 41 .................................... TCTTTAAAAGAAATTTTAATGGAAGTAGAATCTAATTACGA 3564533 36 100.0 38 .................................... ATTGTAATATAATAGCGTTGGTTCTTTGTCAGAACTAA 3564459 36 100.0 36 .................................... TAATCGCCGTGTTGGATTTAAAAACGAATGGATTCT 3564387 36 100.0 42 .................................... TTGGTGGAATTGTTGACGGGCTTGGGCAAAGCTTTTTGTTAA 3564309 36 100.0 38 .................................... TTTAACCCAGATCTTAATACCCTATTCCTCGAATCAGC 3564235 36 100.0 41 .................................... AAAACGAGTTGAATAAAAAATCTATTGATTCCGCACAACAA 3564158 36 100.0 45 .................................... AACAAAGAAGCGTTGTCAATTTCCACTTGCGTAGTATTATTGCAA 3564077 36 100.0 41 .................................... TTGATCATCATTTGATGGGTATACTACTAGCATCTTAATTA 3564000 36 100.0 40 .................................... CTGGGGGATACTTAGTATCTTCCAAGCTTTACTCAGGGCA 3563924 36 100.0 34 .................................... ATTAATTTATTAATTGGTAAATTCACAATTCTCT 3563854 36 97.2 39 ..............G..................... TTAAAATTAGCGAAGGTTTTTCTTCAAAGTAAAAATATT 3563779 36 97.2 37 ..............G..................... ACTTCCAGTGTAGATACAGGAACTACAAAAATATCAA 3563706 36 100.0 35 .................................... GTATAGGTAAGTAGCTCCAAATTTTGTAGTATAAA 3563635 36 100.0 41 .................................... AAATTATCTAAATGAGCTTGTTGATCGACAATGAAGTTGTT 3563558 36 100.0 37 .................................... TCTTTAACATGATTGATTAACCCTTCCATCTTCTCAA 3563485 36 100.0 40 .................................... TTCCCGTTGTGCCAGTCAATCCATATGGAAAAATTCTTGT 3563409 36 100.0 38 .................................... TTTACTTTAGTCATTTTTTTTCTCTCTGCTGATTTTAT 3563335 36 100.0 44 .................................... TGTTTGATCAATTTCACTCCTCCAGATTTTGGTAAAGGCATAAA 3563255 36 100.0 37 .................................... TTATCAAAGATGGTATTGCTTTCGGACGTAAATTTGT 3563182 36 100.0 37 .................................... TTGGAAAGAAAATATTTTATCTGCACCATCTTTTGAT 3563109 36 100.0 37 .................................... TAAAACGATGGCGAGTATCACCAAACATACTAGTGTA 3563036 36 100.0 39 .................................... ATCGAGAATACTTATATAAAGCGCAATAGCATCATTCCA 3562961 36 97.2 44 ..............G..................... GCATTATTCTTTCTTTCGGCGCGAAGAGCATTGGATTTAATTGA 3562881 36 97.2 42 ..............G..................... AGGCTTCTGTTTCTGGAATACCGTTTTTTAGCATTTGTCTAA 3562803 36 97.2 38 ..............G..................... AACAATGGCTAGATATGATGAATCACAAAGGGTTTACA 3562729 36 94.4 38 .........T....G..................... TTCTGAAAAAAGATGAAATCCAGATATTTCATGTAAGG 3562655 36 86.1 24 G........T....G.................C..T GGAACTTTAATTAATAATTAACAA Deletion [3562596] 3562595 36 69.4 0 ..A.T..A.T.C..A.....G...CA.....A...T | ========== ====== ====== ====== ==================================== ============================================= ================== 36 36 98.1 39 CTCTATATTCTTTATAGAAACTAATTGAATGGAAAC # Left flank : TTATCTAATTGTCTACGATATCCCTTGCGATAAACGGCGCAAAAAAATTGCCGACTTGTTATTAGGTTATGGAGAGAGAGTTCAGTATAGTGTGTTTGAATGTGTCTTAAATACACAACAATATCAACAACTTAGCGATCGCTTAAAAAAAAGAATTAATTTAGATGAGGATAACATTAGAATTTATACAATAAGTCGTCACACATTGCAGCAAGTCAAAACTTGGGGTGTAGGAAAAGAACTTACTAAATCACCTGGTTCAATAATTATCTAAGGGCGATCGTATTTTTGAGTAATTTATTTTTATTAGTTGATATTTTTGCCGACGCTTAACTAAAATCCCTATAACTATTATTGTCTCATTATCAGCCTCGATTCTTTGCCAAATATGGCTTTGTGTCATTTTTATTTTATTTTTAACCGCCTATCCTACTCTATCTTTTCTCAGCCTCGCAAACCCTTGCTAGACATTGCACTATATCTGGGTTTTAATGGAGAAT # Right flank : TAAACTATGTGTTCGGCAGATAATTCTGTTTAATTTAAGCGAAAAACTAATTAAAAAAAAGAAAAGCGATCGCTAAATTATTTTCAAGAGCGATCGCCTAATTGTGTTATAATAATTAAAATGGCAAAACCATGCCCGCTATCGAGATGATTAGATGATTATCGAATTAGATAAGGTTGGTATAGTTGGCAGGGTTGATAAACAAACTGTTTAAATAATTTGACTTGCTGTGTCAATAAATCCCATCGTGGTTGATTTCCTCCATCGGTTTTAATTTCTGTTTCCATGCGTTGTATAAATGCTTGTAGGTATTTCCTTCTTCCCAAGTCATTGAGATAGCAACCGCCATTATGATAAATAAAATCGTTTACGGAGTTAATTATCCGTCGATTAATTAGATATAAAACTAGAGAATCAACTATAGGGGCGCGAAATTCTTCAATTAAATCAGAAGCCAAGGCTGCATGACGATAATTACCTTGATGCAAACAAGCTTGATA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTATATTCTTTATAGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //