Array 1 527-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYX010000131.1 Brasilonema sp. CT11 contig188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 526 37 100.0 34 ..................................... CAATCTTCACAAAACCAAATTACTACTTCCCACA 455 37 100.0 34 ..................................... GATTCATGATTTCTCGACACCAAGATAGCCAGGA 384 37 100.0 36 ..................................... TAAGCTTGAACTGTACAACGGCATGGGATACCGAAG 311 37 100.0 36 ..................................... ATTCTGGACAATGATAGCAAGTCAGAAGGCAAATAC 238 37 100.0 34 ..................................... GACAGAATCGCTATTGAGACAGAAGGAATGGCTA 167 37 75.7 0 ..........................ACCCAA.TTG. | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 96.0 35 GTTGAAATTTCTCTTTCTCCCTATTAGGGATTGAAAC # Left flank : GCCGCTTGTACCGTGTGGAAGTGTCTGCTATTTTAACTCCCAAATATCCGCGTGTACGCCGTAGCAACAAAGCTGTTGTCATTCCTTATGAACAGCTATCAGATTACATGCAACGGGTGCAACGCGAAGGGGGCAAGATTGCCAGCATTACACCTTTGTAGTCCCCTTTGGTGAGTCGTCCTTTGGTGGAAAAAACTACAACCGGCAATCAGTTATGGAGCCTTCCAACTGCTGATTGCCGATTTTCCGTAATTACAGGATTTTCTTTGCCAAATGCCCGGATGGGTAGGTGTTGGAAAAAGGGTTTAAAAAAAATGGCTGGATTGCTTACAGGATAAAGATTTTAGAGAAAACTTGTTTAAAACCATCCGCGCTCCTTGCCCAGACTGGATTTCAGCAATTTACCTGTCAACCAATTTACTTTTTCTGATGTTATCATTAGATCATCCGCGCTTTAGAACCTTGAAAACTTTATATGGTGTAGTTTTCTAACTGCCGCA # Right flank : CTAGTTACTCTTGTGAGCGATAGCCCAAAGGGCTGACGCTTCGCGTATCGCTTTGGGTCACTTAAGTCATAAAATCCCCTCCAGGAAGAAGATTCGGAGGGGTATATGTTAAATGAAATAATTAGCTCCGC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTTCTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 9286-8512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYX010000019.1 Brasilonema sp. CT11 contig231, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9285 37 81.1 38 TG...CCGC..........T................. GATTTTATCTCTTGGAATTTAGCAAAGTATTTTATAAG 9210 37 97.3 38 ............................C........ AAGCAAGCACGCATACCCGCTTTATCCGATAAATTAGC 9135 37 97.3 38 ............................C........ TTTAGCAATGGCGAGCCAAACCATTGCATCTGAAGCAG 9060 37 97.3 38 ..................T.................. TTTAGATTGTGCTTCATTTTTTTCAGGTTAGCTCTGCG 8985 37 100.0 36 ..................................... TTATCATATTTGCGATCATCAATTTCAGCCTTGTAA 8912 37 100.0 38 ..................................... TCTAGTATATGTACCTCGGTAGAGTTTTTTATATTCAT 8837 37 100.0 34 ..................................... GTAATTCGTCTGTTTGGTGCGATGAATTTATAGA 8766 37 97.3 37 .....................C............... TCTCCAATTTCGCCGAAGACAACGTTGCAGTTCGCGT 8692 37 97.3 35 ................................A.... ATTAGCTTTGCGTTTTTTTGTATTTGCCTCTTCTG 8620 37 100.0 35 ..................................... GCAAAGTAATCAAAAAAGGGTGAGTGATTGCATCC 8548 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 97.1 37 GTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAAC # Left flank : TGATGGTGGATGCTTATCATGAATTTGAGTACCCACGAGAGATTATCGAAGGAATTATCCGGGGGTTAAAACCCGGTGGTAGGATAGTACTGGTTGAATATCGAGGTGAAAATCCCTTTATTCTGATTAAAGCTTTGCATAAAATGACTCAAAAACAAGTACGAAAAGAAATGCAAGCTGTTGGTTTGGTTTGGCGGGAAACTAAAAACTTGTTACCCCAACAGCATTTGATGATATTTGAAAAACCCTCTGTCTGAGGAGACATTGCGCGGATGGGTAGGTGTTTGAAAAGTCAGGAGCAATTTCGCGGCTCAAAGGCTTATCAGTTCTGAGTTTGAGAGTTTTTTGAACAAAAAACGCGCAAGTTCTAGAACCTTTGTCAGGACTGGATTTGAGGCTATTTTTAAATTTGTACTACTTGACGTTGGATCGCTGAAATGGTACTTTTTTTATGTATCCGCGCAACCGTACCTCGAAAACTAAATAGGTCATGGGTTTCA # Right flank : GGAACGAATTCAAACAACAACTATAGCAGTCCTAAATTATAAGCCCTACGGGCAGGCTACGCGAACGTAAAACTCTCTGTTTTCCTCCTCTGCGTCCTCTGCGCTTCTGCGGTTAATCCAATCAAAACCTTTTTCACAATTCAAATAGGATTCCTATGTAAAAGCTTCTTAACTCTTGAAGAAAAAGCCATCCATATCAAGAAGCTGTCCGGTATTTACATCGCTAAAGACTGGGAGTATATGATAAAGTTCAAATTTCTTTTCCTTCATAAACGCAATGGAATCATTATATAATCTTTGATTTTTATACAAAGCTTTCAATGACAGTTCCATTTGAACCCCAACAACTTTTTGGAGAGATTCATTTGCTCCTTGTAAAATCTGCTCTTCAAAACCTTGACAGTCTAATTTTAAAAAAACTTTGGAATTATCTAACTTATTTTCGTTCCAAAAGGTATCTAACGTTTTTAATTGAATTTGGATTTTCTCTTTAACCTCAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTATCTATTCCCCGTTAAGGGGATTGAAAC # Alternate repeat : GTTGAAATTATCTATTCCCCGTTAAGGGCATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 118-445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYX010000214.1 Brasilonema sp. CT11 contig419, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 118 35 86.5 32 .C..G..--A........................... AGTAGTAAGAGTAGGCGAAGGAAATGTTCCGG 185 37 100.0 37 ..................................... AAGACGGTTCTACTGAACCTGATTCATTATGGTCAGG 259 37 100.0 36 ..................................... TTGAAGGCATAGTTCAATTAGAACAGAGAATAGTCT 332 37 97.3 40 G.................................... CCGAACTACGTGTTATAAATAAATCGGTCGGGAAGCACAA 409 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 96.8 36 CTTTCAACCCGCCTCAAGCTAGGAGGGGCGTTGAAAC # Left flank : ACCTGCATTCACCCTCCTACACCCTGGATTATCCTCTGCTTTTGCCTTGGATATTTCTGCGGACTTCCATCAGATAAGTATTTTACCTGCTTCTCTATGCCTTTCTTAAATACCTACC # Right flank : CCCCGCGCCTAAAACCCTTTATTTATCAAGACTTCTAGAAGCACTTTTGGCAAACCAACCAAAATCGCTCGCTAATTGAAACTTGAAAAGTAAATCAAGTTACAGATGACAACCTAGAAACCTTGCCAACAAACAGATTTGAAGATTTGGCAGCAACCCTAGGGAAATTGACCCCGCTTTCACTTGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTCGGTAGCCACCCTTCGGGTTCGCCACTTTGCCTGAAAGAAAATCTCCCCGGCAAGTGGACTCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTCTTCCTGTCCTCAAGGGACAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAAACTGTTTGACAACAGTCAAACTAACCCACATTTACACAGTACAGAGGCTTGTAACAAGCATGAACTGCGGCGCTATTACTAACTCTTATTTTATTTTCAAGGTT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTAGGAGGGGCGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 14352-12852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYX010000003.1 Brasilonema sp. CT11 contig61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 14351 37 100.0 41 ..................................... ATATGGTTGGACACCCTTGCTATGTGGTCGGGATGGGGTAC 14273 37 100.0 35 ..................................... ACGCAATTCTAAACAATAAGAGCTATACTATTGTA 14201 37 100.0 36 ..................................... CCAAAGCTCTTTAAAAAAGCTTTGAATCTCCGGTAG 14128 37 100.0 35 ..................................... CAGCATTTTGACTAGCTGCTTCCATACTGGCTTGT 14056 37 100.0 39 ..................................... TTGAGACGCCTATACATATCTTGCTCGGTGAGAAGCAAT 13980 37 100.0 41 ..................................... CGGGTTAAGCTGCAAAGCGCTCGCGATCCGAGTTGTGGTAA 13902 37 100.0 36 ..................................... AAGGTAAGTACGCGAATTAAAACCCGAAACTAGGTT 13829 37 100.0 35 ..................................... TTATTTAATATTAGGGGACAATGTAGAAGATTTTA 13757 37 100.0 36 ..................................... TGCTGTGTCTTCCTTCCAATCGCTGCGGGTCGCCGT 13684 37 100.0 34 ..................................... ATCGATTAGCTGGTATCCGGTCAGGTGATATTAA 13613 37 100.0 35 ..................................... GAATGAAGGTATCAACAAAAAACGATCTTGTATTC 13541 37 100.0 40 ..................................... TAGATTCACCAAAGTTATCAATAACATCTTTGCAATTTTT 13464 37 100.0 39 ..................................... TGAAAGTATTTGACTAATATTTGAGGGGAGGGGAATATT 13388 37 100.0 34 ..................................... ATTCAGTGGCGGCGGAAGTAATGGTAATACGAGC 13317 37 100.0 37 ..................................... TTGGTGACATACCCAAAGGGAAAAACGCGGAGACTTC 13243 37 100.0 34 ..................................... TTTTTAATTGATTCCGATACAAGCGCTATCTGTC 13172 37 100.0 34 ..................................... TAATTTGCAGATGGCTTTAAATTTTTTCAATCAA 13101 37 100.0 31 ..................................... AACTAAAAAGATAGATGAACCTACTGATAAT 13033 37 100.0 36 ..................................... CTTTTGTTCTCATGCAACTAATCTAACTTGTCTAGA 12960 37 100.0 35 ..................................... GTTTTGTACGTGCGCGATCATGGTGGGCTTACCTT 12888 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 100.0 36 GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAGAGAAGACAGTGGCTTAGCGCTGATTTTGTTAGAAGATTTAGGCTTACAGTTGCCGATGTTATTTAAACGTTCTGTGAATTTGGGCGAACAGATTTTAGTGAAAGTCCTTCATGCTGATCCTCTTAGAGACGTGATTCAGTTTCAGGAAATTATTTATCAAGAAGCCCAACCTACGGCGAATTCAATGTAATTCCATCCTATATGCTTACTGTTTTGGTAAAGCGTATTGGTGATAAACAACGTGGTGATAACACGTTTTTTCTAGCCGAATGCGCGGATGGGTAGGTGTAAAAAGAAAGGTTAAGCAAAAAATGACTGGAGTGCTTAGAGTACAAGAATTTCGGGCAATATTTGCTTCAAGACATCCGCGCCCCTTACATAGACTGGATTTTAGCTATTTGATGTCAATAAATTTACTTTTTTTGATGATATCATTAGATCATCCGCGATTTAGAACCTTGAAAACCTTATATAGTGCAGTTTTGTGAATACCGCA # Right flank : AAATACAGCTTTACTTCTGGAAGCGGGAAGTCAGTGTGTTGTTAGTGAACGTAAATTTATCCATCAATTCATTTAATTGATGGATAAATTTAGTTTGGGGCTACCATGCTCCCGCGTGAATCAGCGTGTAAATATTTTTGTTGCGTATTATGAACGTACTGTTGGAAAACGAGTTAAAAGCCCAATTTTGATTGCTGACGCCAAGCATACTATGAGCGACATCTGCTGTGCTTGCTGGTTTGATTGGTGTATGGCTAGGTTTTCAATGGCTAGATTTGATTTTGGCTTTTCCAGTTGCTTTGTTGGTATTTTGGAGTGGCTGGACAGTTTTAAAAGAAAATTTACCTTGGCTTGTTGATAGGATGGCGTTAAGCGTAGCTCTGCCGTAGGCAATCGCCCCAGAAGTCATTGATGCGATCGTCCTTTCTGTTCCTGGTGTCGTTAACTGTCATGATATTGCTTCTCGTGGTGTTGTTGCTCGTCAAGTCTTCATCGAAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 12239-13167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYX010000069.1 Brasilonema sp. CT11 contig91a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 12239 36 100.0 37 .................................... CTTTCAGTGTAAGCCAGTTGGCTTTGAAGACGGATTC 12312 36 100.0 36 .................................... AACGCCTCCTGCTGATCTGCAGTCAAAGTAGCACAC 12384 36 100.0 44 .................................... CGCGGGAATAGCTTCCCGAACAGAACCCGCATAGGTTCGTTCAA 12464 36 97.2 36 ....................C............... CCCGGCATTTGCGGAGAACCTTTAGGTGCAAGGGCA 12536 36 100.0 39 .................................... TTTGATCAGCTATTCATATGGTTCGGGGCAAGGCTGCGG 12611 36 100.0 42 .................................... TTTTAGTAGGCTGACCTCCGGTAGGCTCAGGCGGCGAGGATG 12689 36 100.0 39 .................................... GATCTTGTTATAGATCCCCCATATGTTAAACCAAAAACT 12764 36 100.0 39 .................................... ATTTTTTACAAAAAATGCTACACTTGCTACTCTTTTAAT 12839 36 100.0 39 .................................... CTCTTGGCGCCACTGAATGTGTCGTTTGTTCTAAGAAGA 12914 36 100.0 32 .................................... CTTCGTTACGGTTTGTAACTTTTTAAGACCCG 12982 36 100.0 45 .................................... ATCAAATTGTCTGGGGTTAAACCGTGCCTAATTAGGCATATTTTC 13063 36 100.0 33 .................................... ATTTGGAAGAAGTCGATCGCACCATTGTATCGA 13132 36 80.6 0 .......C...TA......CA...G..........A | ========== ====== ====== ====== ==================================== ============================================= ================== 13 36 98.3 38 CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Left flank : ATAACCAGCCAAAATTCGCATGGTTGTGGTTTTGCCAGCACCATTAGGTCCCAAAAACCCCAAAATCTCTCCAGGTTCGACGTCGAAAGTGACATCAGTAATTGCTGAGGTAGAGCCGTATGTTTTACTCAGATGTTCAACTGAAATCATCCGCTTTAACTAGGTGCAAATGGTAATTCATCAAACCATGATAAATCACCAAAACAGTTCTGAGCGTTGAGTACTGAGCAGCTACTGCACTTTTGAGTGTGGAGTTGGTCAAAAACTTGACAATTATAGGTGAGACATTTTATTTTTAAAAGAGTGTGTTGAACTTCATCGACACACTCCGTCCGATCCTTGAAAACCGCATAACTTCGTTTGAGTGCGTCGATTGCTTGCCCAATAAGCTTTTCAGACGCCAAAATGAATTTATTTTTGTGAGATTTTAATCACTTTTTTGGAGTGTGTCGATTTGGGGGTCTCAAACCCTCTCCCAGTAAGGATTCTACAAGTGAACT # Right flank : ATTCCTGTAGAAATTCTTCTTCTTCCGTTAAAATCTGCTTTACAAAATCTTTTAAAAGCAATTGCTTTTCTAGGAAATCGCGAATTCTGTGTGTTTTCGCTGTTCAGGTGTTCTAAAGCCTAGGACAATGCTATCTTTGGGAATTCCAGCAGCTACTAGCTCTAAAGCGATACCTTCTTCTGTACCGTCATGTTGAATCCAGAGTTTATTATCAATAACATCAATGTGCAATAATGTGCCATAGATGCGATAACCGTTTTGCCAGCCAGTTTCTACTAAAAGGTAGCGATCGCGCTCTCGATCAAATACTAATTCAACTTGCACCTGGTCATCGCTACCGAGAAAGTGAGTGTAGTTTTTCAATATTTTTTCAATAATCTCACGATACTGGGTATTTAATAAATCCATCGGATAATCACCTCGTGGCTGGGATTAAAGGTTACTAAACGAATAATGCCATCGTCAATCAGGGTTTGCCCTGCTTCTTCTTCAAAGACAGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 101818-102148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYX010000005.1 Brasilonema sp. CT11 contig81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 101818 36 100.0 41 .................................... TATCCAGTTGATGGAACATTACGACCAATCAGCTAAATAAC 101895 36 100.0 34 .................................... CTGGTGATTTAGCCTACACAGGAGGAACTATGAA 101965 36 100.0 41 .................................... TCACCATTAAATTTGAATTGGGCCTAAAGGAGGTCCAGCTC 102042 36 100.0 35 .................................... GCCATTTGAATTTTTCTTAGTGCATACCCGTGCAG 102113 36 94.4 0 ................AA.................. | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 98.9 38 GTTTCCATCTCCTTGCGGAGAAGAGGTAGTGGAAAG # Left flank : CCGGGATAATCAGCATCACAAAGACGCACACGGCGGTAAGTCTCAATGTTGGGCAATATTTTGTTCCAAATTCCAATTCCTTGGAAAATGAGCGCCGAAAGCATATGCACCGCATAAGCTTGTCCTTTGGCTACCGCCGCTGATTCTACTTTTGCCTCTACCAGCAGCACACTTAACCCGGAATCTTTCAATGCAGAGGCTAGGGTTAAGCCAACAATCCCACCGCCGACGATGACTAAATCATAATCATATCCCCGCGTCTGTGTCGGTGTTTGGGGAGGGTTAGGGGTTTGAAGCTGCGCTTGCGCCATTGTTAAGATAAGTTACAGCGTTTTCATTCTTATTTTGACGCAAACGGGCTAGGAAGAGCAAGTTGAGAAGGTGTCAGTCCCGAATTGCCAGAATAATAAGTATTTTTGAACCGCAGAGGCGCAGAGAACACAGAGAGAAGAGGTAGTGGAAAGTTGTCAACTTTCAATAGCTGACAGACGAGGACAAGA # Right flank : GAGTTCACTGCTGAAACCCTTACTGGAAAAGACTTTCAGACCCCTAAATCGACACCACTCAAGGTAACGATTAAAATTTATCAGAAATAAATTAATTTTGAGGTCTGAAAAGCTTACTGGGTAAACAATCGACACCAGTCAACGAAGTTATGCGGTTTTCAAGGATCGGGTGAGTGGTGTCGATAAACGTCACACACGCTGCATAAACTATAAGAGCATTACCGTGTGACAGTCAAGTTTTGGTATAAAAACTTAACTGTGTATTTGGTGGATAATATTGAGTGCTTCTCAAATTTCTCACATAGCGTTTCCATAGAAATAAAAATACTCGCCATTCTAAACAGCGAGCAAAGCTTAATGAGCATGAGGATATATAGTTTTGACGAGATGCTTGCCTGATTAAGCCCGCTTATTAACTATTATTTATTGAGCAGGAGAAGGTGAAGCAGGAGTGGATGGAGAGGTGGAAGGTGATGCTGTGGGTGTAGTACCTGGTGTAG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCCTTGCGGAGAAGAGGTAGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 11267-10191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYX010000114.1 Brasilonema sp. CT11 contig155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 11266 37 100.0 38 ..................................... ATCTCTTAAAAATATCCTTAGCCATGATATAGACGTTG 11191 37 100.0 42 ..................................... TTGAATTCCTCAACAACCTCGCAGCTGTACGCCAGTGCATCC 11112 37 100.0 33 ..................................... TTGTATCCATGTCTAGCGGTTTCAGTTCTAGCT 11042 37 100.0 35 ..................................... ATTCTACTAAGTTACTAGAAACCAGAGAGTAAATG 10970 37 100.0 41 ..................................... AAATCAAAGTTAGCTTTTACTTCACTATCGGCTTGTTGCGA 10892 37 100.0 36 ..................................... GGCTATTTGCTGCGGTGTCAAATCTTGACCATATGA 10819 37 100.0 36 ..................................... GGCTATTTGCTGCGGTGTCAAATCTTGACCATATGA 10746 37 100.0 40 ..................................... TGGAGTACTCAAGCGATCGCGCAAAATGGAATCCAAGAAA 10669 37 100.0 36 ..................................... GCGTTCATCCCCGGCTAGCTTTAGACTGTCCGTGAG 10596 37 100.0 35 ..................................... GTTCCGTTTGCATTAAGAGCAAAAGCACTCACATA 10524 37 100.0 34 ..................................... ACTTGATGGATTAATATCAAGCCTTCGGTTTTAC 10453 37 100.0 33 ..................................... TATCGTTCCCGTGTGCCCCACGGTACGGAGTCC 10383 37 97.3 41 .................T................... TACAGCTTGAGCGATCGCGGTCAATTCCTGTAAGGTCGTTT 10305 37 97.3 41 ...T................................. ATCATGCAAAGGACGCATACAAACGATATCTCTGGGTATAT 10227 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 99.6 37 GTTGAAATCATTTATTCCCCGTTAAGGGGATTGAAAC # Left flank : GATGCCCCATTTTTTGTTTTAACTGTAAAAGGTGCTGGCAGCAACTGTGAAAAACCTTTTGGTACGTTACAAGAAGTTGATGGGATTTTTGCTGAACCAGGTACGCATTTGATCAGGGACTACATTAGAACTCGAACGGCTTTCAGGTTAATTCTCCAGGGTATGTACAATGAATTAAAAGATCCACAAAGCTGGAAATTGACTTATCCACGTAATATGACTCCTAATAAAACCTCAGAATTTTGAAAGATTGCGCGGATGGGTAGCTGTTTGAAAAGTCAATAGGAAATTTGCGGCTCAAAGCCTTATCAATTCTGAGTTTGAGAGTTTTTCAAAAAATAGGCATCCGCGCAATCCCTAGAACCCTTGCCAGTTGAGGGTTTAAGGCTATTTTGAAATTTGCACTACTTGACACCTGATCGCTGAAATGGTAATTTTGTTATACATCCGCGCAACCGCACCTCGAAAACTAAATAGGTCATGGGTTTCATATGACCGCA # Right flank : GTTGTATGGCTCACCATCGCTAACACTACAGCGCGATAGGTTGAAATCATTTGTGGCGATTATAAAATCTTTCAGGAAATTTAATTGCTGATCTCAAGTTCGCCTAATTAGGTTGATCTGAATTGAAAATAAGGAGTGAAGGAGAGAGAGAGTGAGGGATTAAAAAATGAGTGTGTTACTCAGCAGTAACACACCCGATTCCAAAATTAAATTCCCAGGCGTTGATAAACCTCCTCTAAATGTTTTAAATGCTGCTGTGCATCAAAACACGCTTCAATTTCTGCTGACGATAACTTTTGGTTAACGCGAGAGTCTTTGACAATCAACTCATGAAAATCACCGTCTGGTTTGTTCCAAGCGGTGTGAGCATTTTCTTGGACAATTGCGTAAGCTTCTTCGCGGCTCATTCCTTTGTCTACCAGTGCTAATAGTACCCTCTGGCTGAATACCACGCCGCCATAGCAGTACATATTCCGTTCCATGTTGTCTGGATAAACCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCATTTATTCCCCGTTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //