Array 1 162200-160235 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVC01000003.1 Salmonella enterica isolate STY161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162199 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162138 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162077 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162016 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 161955 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 161894 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 161833 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 161771 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161710 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161649 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161588 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161527 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161466 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161405 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161344 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161283 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161222 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161161 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161100 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161039 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 160978 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 160916 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 160813 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 160752 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160691 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160630 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160569 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160508 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160447 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160386 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160325 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160264 29 96.6 0 A............................ | A [160237] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179824-178331 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVC01000003.1 Salmonella enterica isolate STY161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179823 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179762 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179701 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179640 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179579 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179518 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179457 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179396 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179335 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179274 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179213 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179152 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179091 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179030 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178969 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178908 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178846 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178785 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178724 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178663 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178602 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178541 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178480 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178419 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178358 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //