Array 1 82683-81561 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTB01000001.1 Bacteroides pyogenes strain NCTC11853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 82682 47 100.0 30 ............................................... TTTAACCTGACATATTCATTTTGGTGGGAG 82605 47 100.0 29 ............................................... AACAACGTCGTTTTCTTCTCCAATTCGTT 82529 47 100.0 30 ............................................... ACTTATACTCTGGTGAATTCTCTTTTTAAT 82452 47 100.0 30 ............................................... ATACAAAAAGAGAAGCAATAGAGTTTTTAA 82375 47 100.0 29 ............................................... GCTATCGCTCATGCCATTTACATTGAAGG 82299 47 100.0 30 ............................................... AAGGTTTCTATGTACCTGAGGAGCGAATAA 82222 47 100.0 29 ............................................... ATAGTCTGTAATCTGTTCGTAAGCTGAAT 82146 47 100.0 30 ............................................... TAATTTCTTCGGTAGTCTTTATCGTGTCAC 82069 47 100.0 30 ............................................... CGGACATGACGCGTACAGCCCGGGTCAATG 81992 47 100.0 30 ............................................... TATTTTTGTTGAAAATCTGAAAAAACGCTA 81915 47 100.0 30 ............................................... GTTCTTGAAAACGTTCTTCATCCTCCATTG 81838 47 100.0 30 ............................................... GGCGGACAATTCGGTCGTTTCCGCGTTTTC 81761 47 100.0 29 ............................................... CGGCGATAATGGAACTTCATGCAGAAGGT 81685 47 100.0 29 ............................................... TCGATCCATCTTTGTAATAAAAAATGAGT 81609 47 83.0 0 ..............................C.GCC.G....T...AA | T,G [81568,81570] ========== ====== ====== ====== =============================================== ============================== ================== 15 47 98.9 30 GCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGC # Left flank : GCATCGTTATATAAATGTTTTTCTGGAGAACTGCGTCGTATAAGCTATCCGGAGCGTTGATGGATCGTTTTAGTGAATATCGGGTTATGTGGGTTCTTGTTCTTTTTGATCTACCAACGGAAACTAAGAAAGACAAAAAGGCATATGCAGATTTTAGGAAGAATTTGCAGAAAGACGGTTTTACTATGTTTCAATTCTCAATTTATATACGACATTGTGCCAGTAGTGAGAACGCAGCTGTACATATAAAAAGAGTTAAATCTTTCTTGCCTGAATATGGACAGGTTGGGATTATGTGTATAACAGATAAGCAGTTTGGAGACATTGAACTTTTTTATGGAAAGAAAATTCAAACCACTAATGCACCAGGTCAACAATTAGAATTATTTTAAAATAAAAAATCCCGTACTAACACGGGATTTTTTATTGTTAATGAGTAGGTTTTTCTTATTCTAATAGTCTTGTTAATTTGTTGATTATTAGTTCTCTACTCTGATTCA # Right flank : AAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGAGAGCGTTTCTTCCAGAATTCAGGCGTCATCTCCGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCGCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTAGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCTCTTTTCATCAACTTATGGAGTTTGTAGAGTGCAGCTTCGGGGGTGAAAGGGATGTCCGCTGCGGTAGAAACCATAATGGAAACGTTTACTCCCCGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAAGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAGATGCTTACGGCGTAGGCGTGACTCAACATACGGTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 443970-442592 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTB01000001.1 Bacteroides pyogenes strain NCTC11853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 443969 36 100.0 30 .................................... ACAGTGGTGATCGCTACGAAGGCTCATACA 443903 36 100.0 30 .................................... GATATTTGCGTAGGATATGCAATGACGGGA 443837 36 100.0 30 .................................... TACCGTAAGATTTAGCCCTTTCAACCGCTT 443771 36 100.0 30 .................................... TAGGGTTCTTATTATGGAAATTCACAATAA 443705 36 100.0 30 .................................... TTGAAAGAGGAGTAGGAAGCTCCCCAAACT 443639 36 100.0 29 .................................... CACAACAAGCTCTTTGCCATCCGTCTCAA 443574 36 100.0 30 .................................... GGGCTATTCCATGCTTCGCATCCACCGAGT 443508 36 100.0 30 .................................... AGTACTTCGGTAGTTATCTCCGGGCAAACC 443442 36 100.0 30 .................................... TAGATCTCACCGTTCGCGACATCACCGCCC 443376 36 100.0 29 .................................... CATTAAAGAGTTTGCTGTCGGGTCTGATG 443311 36 100.0 30 .................................... ACGCTGATCCATAGACTGAACATAAACAAG 443245 36 100.0 30 .................................... GGGTGAAGTGTACTCGTTTCATCTTATTTT 443179 36 100.0 30 .................................... AAGAATAGCATTTTTAATATTTTCTCCAAA 443113 36 100.0 30 .................................... CATTCTTCAAGTGTTCGAGGGTAAGCAGGT 443047 36 100.0 30 .................................... GCCTCTACGATAGCCACGTCCTTGATTGCC 442981 36 100.0 30 .................................... TTGAAGAACTTGTCTACAACCTCATGGCGC 442915 36 100.0 29 .................................... GAAAACAGCGAACTACAATACTACAATAC 442850 36 100.0 30 .................................... TCAATCCTTTCGCTTCCCTGATAATATGTA 442784 36 100.0 30 .................................... ATCCGCGCGGAGAGACATCTGCGGGTTCTC 442718 36 88.9 55 A.....................A..........TG. TATCGCTGACGAGTGTATAGATAACGGATTCAAAATCACCTGTGTACTTGCCGCT 442627 36 80.6 0 .....A.......T.G.........A..C..G...T | ========== ====== ====== ====== ==================================== ======================================================= ================== 21 36 98.5 31 GTTGTGGATGCCACTAGTTTGAGTGGTATAGACAAC # Left flank : CGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGATTGATGCCTTATTTTGCTAACCATGAAGCAACACAAGAGCAAGTGGAGATGGAATTGCGTCATTACGAAGATCATCGCAGGCGTGTATTTAATTGGGTCTTTGCTTTGGAAAAATCCGTATTGAAGAATGAAAAGTTGAGAAGGTTCTATGAAGAATCTCAGGGAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCATCACTCGTTTCGGAAGAAGAATATGAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCTGACTTGGAAATTGGGAAGCTGCCCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTTT # Right flank : GTATATAGAGCCTTCCAATGAGTTTCGGGTAGCTAAAAAATCGGGGAAAGGAAGATTTGTAGGCGAATAAAAGAACTCACTGACTGCATAAAGTATTCATTACAGTCAGTGAATCTTAATTTTGAGAGAAGTAGAAAGATGTAGGAGAATAGAACTACTTACTCTATTTTTTGTTTATAGAATGATAACCATATCCGCCTAAACACCGCACGAAGAAAAGAGAAACACTGCCATTAATAGTCGCTGCAAACTTTATTCAGGTCGACGGTGAAACCATCGTTCAATGGCATGAATTTGCCTTTTCGTTTCAGAAATTCTATCAATTCGTCGATATTCATGTTTTCGGCGGAGCAGGTGTAAAAATGCCGGGAGATGCCGAACTTCTTGATAATGGCTTCTTTCAGGCTGGCTTCCGAATAACTGTTTCCCTCCATCATGCGGAGAACTTCATGAGCGTGTAGTTGTTCCATAACGATTTATTAATTTGAATGATGTTATGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTAGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 946556-946320 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTB01000001.1 Bacteroides pyogenes strain NCTC11853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 946555 36 97.2 30 ..............C..................... GGAACATCAAGCAGCAACTCGACGGAGTGG 946489 36 100.0 30 .................................... TATTCATTGTTGCGAAGTATATCGTAGTAT 946423 36 100.0 31 .................................... GCACGCAAGACGCAAATGCGAAGGGAACCAA 946356 35 88.9 0 C..............-...............C.T.. | CC [946326] ========== ====== ====== ====== ==================================== =============================== ================== 4 36 96.5 31 GTTTTATTCCGTCTTGATTTGCAAGCGGGCGACAGC # Left flank : ATCGAATCCATCTACACTGCCTATACCCTTTTCAACATCATCCGGTTGCTACCAATATATCCGTCATTGAACAGCTTTTGTCCGAGAACGTTCGCTTCCTTAACCAACAGTAGCTATCCGAAGTTCCAACAGCTGCTATTCAATATTCCCAAAGTCCTCTTTCAATGTTTCAGCAATCCCTCTTCGGTTTCCACAGAAATGCTCGTGGCTTCCGCAGGAACGCTCGTGGGGTTCCGCCAGTTCACAACGGAAATCAATACCGTCTTCACCTCGTTTCCACAGGAATACTCATAGAGTTCCGCAGGAACGCTCTTCAATATTCCCAAACTCCCCATTCTGTGTTTCAAAAGTTTCCCATTAGTGAAACAAAAGTTTCCCATTGGGGAAACTTTATTTTCCCAAGCGGGAAACTTTTGTTTCCCCAGTGGGAAACTCGACGGGCGCTATACATACAGCAACCTGTGCATAGCAGCTTAGTATGATTGGGCATACACGGCGGA # Right flank : GGCTAATGCGGTTTCCATTCAAGGGGGGGGCTCTTTTCTCCTTTCGGGGCGAAATAGCGAACGAAAACCCACGAACTTTCGGCGATATAAGAAATTTTAAAGACCAAATGCCGAATCATTCAAATAAAACATGTACTTTTGTCGTTCGTAAATTTGCAACCGATTGAAAGTTAAAACCATGAAGGCGAAAACTTCAATCTACAACAACAACAGAAAATGGATAAATTCAGTTATGCAATCGGGCTCGGTATCGGGCAGAACTTATTGAGCATGGGAGCCAAGGGCATCGAGGTAGACGACTTTGCACAGGCGATAAAAGACGTATTGGAGCACAACCCGACAGCAATCAGCCATCAGGAGGCCCGCGAAATAGTAAACAAATACTTCGAAGAATTGGAAACGAAGGTGAACGCCGCCAACATCGAACAAGGAAAGGCTTTTCTGGAAGAGAACAAGAAGAGGGCCGGCATCGTGACCCTGCCCAGCGGATTGCAGTACGA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTCCGTCTTGATTTGCAAGCGGGCGACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //