Array 1 404-861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPNN010000015.1 Lactiplantibacillus pentosus strain B8 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 404 29 96.6 33 ............................C GCTTGTCTTGCGTGTAAAGCCGGTCGGCTTTCA 466 29 100.0 32 ............................. ACGATTAAATGCCGGCTTATCTAGTGACATGA 527 29 100.0 32 ............................. TACGGCTGCCGACTTCGACGGCGTTCATACGG 588 29 96.6 32 ............................C ACATAGATACACGTATATTTTGTGCCAAATTA 649 29 100.0 32 ............................. TCTCCTCAGCACGTCTGATAGCTTCCCTTTCA 710 29 100.0 32 ............................. TTCTACACGCCTTATTGTAGCTATTGCCACTT 771 29 100.0 32 ............................. CAGTCACGATTGTTGTAAACTGGCCACCTTCA 832 29 93.1 0 T.................A.......... | T [856] ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : CCCGTAAGGTCTTAGGCTGGAAGACACCGTCTGAAGTTTTCTTCGGTAAAAAGTTACACTTGATTTGACAATTCGTCTCGGCAAAAAACGACATTTTCACATCGGCGTTGACACCAGACACTACAACCTATTAACACTATCACCTGAACGAGCAACATCATATGATTAATTGGAGTACTTGGTGGCCGAGATTATTTTACAGCATATGACATCTCACACGGCCATTATCAAATTTAGTATCTAGCGTCATTCTGAGCTTCTTCAAATATTACTGCGTCCCAATGGCAAACTATTGATTTTATTTGGAACATACCTTATAGTCAGAACACTAGCACTTCGACAAGTTGACCCAAAACAGTCATTTTTATATTTTAGATTGGTGATTTACCGGCATTTTTTTAGTC # Right flank : TAAACTCGATGGTTCCTCAACGACTGCCTTGTTCTCCGCACATGCAGTGTTGCACCGGGCCAGTGCCATTGTTCAATACCAAATATTTTGTTCAAAAAAAGACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAATTAAGTCTTAAATTAAGCAAGTGCCTTTTTAGCAGTGTCAACTAATGCTTTGAATGCATCCGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCCGCGTTAATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 207205-206771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPNN010000002.1 Lactiplantibacillus pentosus strain B8 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 207204 36 97.2 30 .......................G............ AATGTTTTAGCATCCATTCATTCCCCACCT 207138 36 97.2 30 .......................G............ CATTGCCTGGTAAAGAGGGCCGTGGTTTTA 207072 36 100.0 30 .................................... CTCAGACGACGCCTTTAGATTGCCCAGGTA 207006 36 100.0 30 .................................... AGAATCATTTGGTTATGTCAGTGTGATTGT 206940 36 100.0 30 .................................... CCAGAGGTCTACCGACTTCTGTCAGAGGTT 206874 36 100.0 30 .................................... CAAGATGAATTAGAACAGGACCGACTGGCG 206808 36 80.6 0 ................GG.........AC....GTT | AC [206782] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGAACCATTGAAGTTAATCAATATTTGACTAAGTTGGAACGACTGATTAGTGAGTCGTTAGCCGATGAAGATCGTAATCAGATTCATGATAGTTTGAGTAACTTATATTCAACTGTTCAACAACAACTTTTCTTAACGGACCTGCCACTGGAGGTAACTTACGATTTCGATATGAAGCACTTATTGAAATTTGCAAAAATTCATTTCGATGAGAAGTGGCAGACTAATCCTTATGATATAATTTAGTCAGTCCTAAAGGTTCATCAAGAGTGCGGTATTGAATCATGCGTGGTGTTGACCAACGTTGCGCACTATTTGACCGTCTCAGAAATGCAAGAACTTAAAAATAGCGTGCCAATGACCGGACAATCATTGTTACTGCTGGAGTTCTGCGTGATGAATCAACGTGATTATTATGATGTCGGGACATTTAATTATATTGATGAGGACTTTGTTGATTGGTACTGATGAAATGTTAGATTTCGATTAGAAATTAACG # Right flank : AGTCTGCCACGTATGTTGTTACCATCGTTTAAAATATCATTATAGGTCGTTAACTATGTGAGGATTCTGATTTGTCGTAGTCAATTTAAAAAGAATCTGTATTTTGAGAATGAGAGCTCAGCTGTCATACTAAACATGCGAGGCGTTCACCACCGTCCACTAATCCACAATAATCTTCCGCACCCCACAAAACGCAACGTCCTGCTGGTCACCAAACTGCCGCATGACCTCGCCGTGTGTCACGCAAGCGATACAATCATATGTTTGAGCGTACTTACTCAGAGTTGTGAGCACTCGCGACTTAACTTCAGCGGCTGTCTCATAGTGCAGAGGACTGTCTGCAACTCGTTGGCCAGCATGTTGTCGATAAATCTGATAGGCCACGCTAGCTTGTTCGTCGGTGTCAGTTCGTGAACCGGTATTATCAGGTTGCCACTCGCGCAGTCCGAGCTCAACTTTTAATGGAATATCGTTAAACCGCACGATTTCTAGTGCCGTCT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : GTTTCAGAAGGACATTAAATCAAGAAGGTCAAGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 27609-27842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPNN010000004.1 Lactiplantibacillus pentosus strain B8 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27609 36 100.0 30 .................................... TTTTATCATGTCAACCGAGTATATCAATGA 27675 36 100.0 30 .................................... TAATCCCGACCAAATTAACAAGGGAAATAA 27741 36 100.0 30 .................................... GAGGTGATGGAGGGGTCAAGGGGGTCTGGG 27807 36 97.2 0 ..........................A......... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCATGGATTTAACGCACAACCCTAGTGCAGTTTTAGAGGCACTTGTTCAAACTCATGTTGAGTTAGGACTCAAGCAATGCCCTGTGATGACCAATGTTAGCCACTATTTGAACTCGCAACAATGGGCCGCTTTTGAACAGCAAGTGGCGGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : CAGAATCGTTTCGACCTGTCATCCGGGTCGCCGACAGTGGTAATTTTAAGTAGTTGTAGAATAACCCCCGTGTTACTGTACATCTTGAATAGTAGTCACTACCCCTTAACCTCCAAGCCCACCAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTTGG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 9611-9398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPNN010000045.1 Lactiplantibacillus pentosus strain B8 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9610 29 96.6 32 ........T.................... AAATTGCCTATATGATCACGCTTGATGTCCCG 9549 29 96.6 32 ............................T TTTAAGCGGGTTAAACATTGCCCGAGCTCGTG 9488 29 100.0 33 ............................. GCCGTCCAGGACAAAGAAAAGGCCAGCAATTCG 9426 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 97.4 33 GTATTCCCCGTGTATACGGGGGTGATCCC # Left flank : GCATCCAAAGGGACGGGTTGTGCCACATGTGACCATTGAACAACAGAAAAAATGGCTAGAAGACCGTGCGGCACGAGCTGGATTTGAGTTGATTCGTCGTAGCAATGTAGAATCTGATACAATTCACAAGTTAGCATTTGATGTTGTAAGCCATGATTGGCCAGTGCTTCACCACCATACAGAAACTAGCGTTCGCATGAGCCGTGTTACGTTTGAAGGACTCTTACGCGTCAAAGACGTAACGGCCCTCAAGCGAACCTTGACGATGGGGATTGGCCGTGAAAGAGCATTTGGTATGGGCTTAATGACGATTATTCCTGAAGCACAATGATTAGGATAGGCTCGAGTTGGTGAGTCGTGGGTACGATATGATGTTTGCTGGGGTTGTCAGTGGGAGGCTGGTTTGATAGCGATACGCTACTGACTGTGTTAGAAACCAAGTTAACTAAAAACTGCCATGTGGTGTTTTCAGAAAGGCTTAGAGACGGGATTTATTAAGT # Right flank : CATAACGCAGGCCAATTTTCACATTCATCACAGCTCAAAAAGCGAGCCCCCAACCAAGGGACTCGCTTTTCTATCACTCATAATACTATTCCGTATGATGTTTCCGCACCGGGCTGACCCAAGTTCCGCTACCGTAACCAAGAATCGTTTTAACGGCTGGAATCAGTGTTGTCACTAGGGCGAGTGCGTTGACTTGCCAGTAGATCAGCATGTATAGCGGCATAAAAATCAAGTATTTGAATTTACGACCGCGGTCATCGACAATCAGGGCTGACAGTAGCTGCAAGACGCCGGCAAACATCTCGAAAGTCACGAAGATGAAGGCCATGCAGAACATGTGGTAAACCCGTTCGTAGTTGCCCGTAAAGAAGAAAGTGACGAATGAAATTAAGAAAATCAGTGTTGAGACAAAGAAGAATAGGGACCAGATAATACTCAAGGTTTGGTCAGTAATGAACGCCCATTGCTTGAGGTACTTGCCAGGGTGGCTTGCGACCCGT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGTATACGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.70,-10.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 667-1182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPNN010000073.1 Lactiplantibacillus pentosus strain B8 contig73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 667 28 100.0 33 ............................ CTGTAATCCCGACAGGTTTACCGCCAGAATACA 728 28 100.0 33 ............................ TACCACCGACATTGGTTGACTCCTTAATAATGT 789 28 100.0 33 ............................ CACGTAGTCATAGAGTATCTCGCCCGACGAATA 850 28 100.0 33 ............................ TTTTAATCTATTAGCTGCATATAGAAACTAGCA 911 28 100.0 33 ............................ TCAGATTGCGGCCGACGCTGGTCTGATGGTGCA 972 28 96.4 33 ..........T................. TATATGGGTCGACACTTGTCCTAATTCGCATGA 1033 28 96.4 33 ..........T................. CAACGGTATCACATACGTTAAAGATACGCCATT 1094 28 96.4 33 ..........T................. CAATTGGGATAAAAACGCTGATACGATTTTAAA 1155 28 92.9 0 .................A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : CGTCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGGATTTTTGGCGAAATTGCCACTGTTTGATGGAAACAACTCAGAATAATATAACTAGTAGTAGTGAACCACGCCGCAGAAAGGGATTTAACGGATGATTTTATAGCCATTCTTCGCTTTATCAGTATTATATGACCATTTAGACCGGTTAATTGTAAATTCGTTTATACGGCAATTTTGAGCCGAATTCAAGCGATTCGCGAAATCTTGAGGAGCAATCATCTTTCAAGGGCGACAGCAAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAACAAAGCCTAAAGTAAGAAAAAGTAACACGCAAATCACTCCAAATTTCTTACGCATTGAAATATTTAGTAAGCGGCTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAATCACATCGCAATGGAAAATGCAGATGTGGTCTTTCTGATTGTTCGATAGTTTTTTGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAATACATCTTCAGTCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGCATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTGAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATACTCGCTCCAATATACTTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //