Array 1 18479-16863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMO01000002.1 Salmonella enterica subsp. enterica serovar Newport str. CVM17619 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18478 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 18417 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 18356 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 18295 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 18234 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 18173 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 18112 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 18051 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 17990 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 17929 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 17868 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 17807 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 17746 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 17685 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 17624 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 17563 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 17502 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 17441 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 17380 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 17319 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 17258 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 17197 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 17136 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 17075 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 17014 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 16953 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 16892 29 100.0 0 ............................. | A [16865] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36334-35148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMO01000002.1 Salmonella enterica subsp. enterica serovar Newport str. CVM17619 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36333 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 36272 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 36211 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 36150 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 36089 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 36028 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 35967 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 35906 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 35845 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 35784 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 35723 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 35662 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 35601 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 35540 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 35479 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 35418 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 35357 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 35296 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 35235 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 35175 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //