Array 1 39-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJK02000062.1 Aggregatibacter actinomycetemcomitans serotype a str. H5P1 contig00075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39 28 100.0 32 ............................ ACTCACACAACTTGTCGATTAAAAGTGTATTT 99 28 100.0 32 ............................ TTTTACTATACTAACCAGCATTCCACTTTCTC 159 28 100.0 32 ............................ AAAATCAAAAACATCTATTTTTGCTGTACAAA 219 28 100.0 32 ............................ ACACTTTGTGGGAAATATTCATTATTGATTTT 279 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : TAGAAATGTTGAAAATTACATTTCTTGCAAGAATAGGGC # Right flank : ATGATTACCTACAAAGGAAAGATAGTGGAAATCTTCACTGCCGAATAGGCAGCTTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 34377-35068 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJK02000019.1 Aggregatibacter actinomycetemcomitans serotype a str. H5P1 contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 34377 33 100.0 33 ................................. CATTGACCTATGCAAAAAAAGCGGTTAATGATC 34443 33 97.0 32 ................................G GCGTCAGTCCCGCTTACTTAAAGTATGGGGCG 34508 33 100.0 33 ................................. CACGGTGTCTGATTTACTCCACCCGCCCAACTC 34574 33 97.0 34 ................................G TTGAAGCGGCGTAGTGTGTTGCGATATTCAACAG 34641 33 97.0 32 ................................A TACTACCAAAACCTGTAAAACCACCAGATTTA 34706 33 97.0 32 ................................C TTGTACTGTTCCTAAAGAAATTCAAAAGGGCA 34771 33 100.0 32 ................................. TGTAATCTTTTAGCTGGTGAATCTTTATCATT 34836 33 100.0 35 ................................. ATCAAGGCAATGGGGTTGTTGACAGCAGCTACTAA 34904 33 97.0 33 ................................C TTATGTAGGTTATATATTAGCACCTGTTGCTGC 34970 33 97.0 33 ................................A CTACCGGCACCTGGAATTGGTTAGCCAATACCC 35036 33 78.8 0 .......T.....CA.....C...T......TA | ========== ====== ====== ====== ================================= =================================== ================== 11 33 96.4 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : AGGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36983-36619 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJK02000067.1 Aggregatibacter actinomycetemcomitans serotype a str. H5P1 contig00085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 36982 32 100.0 34 ................................ AATGTAGCCCTGAACACCAAGCACGCGCGTATAT 36916 32 100.0 34 ................................ TTCATGATGTAACCCGTTGTTTCCGCAATTTTTG 36850 32 100.0 35 ................................ TTGACCATGTGTATTTAATTGTCCTGCTATATTAT 36783 32 100.0 34 ................................ CGAAGACGCAGTGGAATCTCGTCGTTTTGAGCGT 36717 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 36650 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 97.4 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGACGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 119302-122684 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJK02000067.1 Aggregatibacter actinomycetemcomitans serotype a str. H5P1 contig00085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================== ================== 119302 28 100.0 32 ............................ TGCTCAAGCACCGGTTCAACAAGCAGTAGGTA 119362 28 100.0 32 ............................ ATATTATTTAAAGCGTCTAGTATAATGTCTGC 119422 28 100.0 32 ............................ TGAAACAAGTTCTCCTAAACCAACAAAATTAT 119482 28 100.0 32 ............................ AATCACAATCTGTTTTTCGATCAATTAACAAT 119542 28 100.0 32 ............................ TAATACTAGAGTTATGATGTTGACTCATGTTA 119602 28 100.0 32 ............................ GTAACGATTACGTGCTTGATGTTGTCTGATTT 119662 28 100.0 32 ............................ ATATTCCGGATCATCATTATATCCGTTATGAT 119722 28 100.0 32 ............................ ACTCGCCTGCTTTTGGTTCAAAAAAACCATTC 119782 28 100.0 32 ............................ CCGAACACGAACGCTTAATCACAATCGAAGAT 119842 28 100.0 32 ............................ ATAAATTTTGACTATTTAGAAATGATAAGAAA 119902 28 100.0 32 ............................ CTTCTTCAACAAGACTATCGCTTAAAGAATCG 119962 28 100.0 33 ............................ GTTTTGAGAGAAGTTATTTTATGCTAAAAATAA 120023 28 100.0 32 ............................ TATATACTTTTTGTATATTTTTTGTACATTAT 120083 28 100.0 32 ............................ GAAATTTTTATTAGAAACTTTTATTTGAAAAT 120143 28 100.0 32 ............................ TCATTATATCCATTATGATTACTTACTAAATC 120203 28 100.0 32 ............................ ATAAATTTTGACTATTTAGAAATGATAAGAAA 120263 28 100.0 33 ............................ TAGAAGACCGCCATTTAACGAAAATCACATGAA 120324 28 100.0 32 ............................ GTTGTTTGGAAAAGAAAAGATTTACAATAGAT 120384 28 100.0 32 ............................ AGTCTTGTTGAAGAAGGGCTTATCTCACGTTT 120444 28 100.0 32 ............................ ATTTTAGCAATTCCATTTACCGTTTCCGGTGA 120504 28 100.0 32 ............................ ATGATACCTAAAGATATCGCAGCATTGTCAAT 120564 28 100.0 32 ............................ CTTTTACTACACTTACCAGCATTCCACCTTCT 120624 28 100.0 32 ............................ TAAAAACTGACGAATATCTTTGCAATTATTTA 120684 28 100.0 32 ............................ TTTGGATCAGTCCGATGAAAATAGTATTGAAT 120744 28 100.0 34 ............................ CCAAATATCTAATTAAAGCCACACCTGAAACAAG 120806 28 100.0 32 ............................ TTGTGGGCAAATGCGCCTCTTGGTATTTTTTC 120866 28 100.0 32 ............................ TTTACCTGATTTGTTGTATAAATCAAGTAAGA 120926 28 100.0 32 ............................ ATGAATTTTGACTATTTAGAAATGATAAGAAA 120986 28 100.0 32 ............................ CGTACCGTATTTTTTACCACGATAAAAACTTA 121046 28 100.0 32 ............................ AAACAACAGCAAGTTCATTTTTATGTACTTTT 121106 28 100.0 32 ............................ TGAAATGATGATTTCAGTTTGCTTAACCGGTC 121166 28 100.0 32 ............................ CTATTTATTTTGAAATAATTTTACGATAAGCT 121226 28 100.0 32 ............................ TGAAAGTAATGAAATTAGCTTCATTATTCGCA 121286 28 100.0 32 ............................ AACAGCAACCCCTGCTCAAGCACCGGTTCAGG 121346 28 100.0 32 ............................ TAACCCGATTGCCCGCAAAGTGGATTATGTGG 121406 28 100.0 32 ............................ ACACCGGCGTCGTTAGCGATTTGCATAAGCTC 121466 28 100.0 32 ............................ TTAATCTACCCGACCGCGATATTGCTGATGTG 121526 28 100.0 32 ............................ TCGACCAAAATCTGTATTTTGGAATAATGAAC 121586 28 100.0 32 ............................ TGCACCATTACTAAATTTATGCCGTTTTCAAT 121646 28 100.0 32 ............................ TGTTGAAAATTACATTTCTTGCAAGAATAAGG 121706 28 100.0 32 ............................ TTGCGGTAGCAAGGGTCCTATTATTTGAAAAT 121766 28 100.0 32 ............................ TCTATATCAATTCCTGATGTATCCAAATCATA 121826 28 100.0 32 ............................ AACAATTTAATTGTTTTAGCTTTCTTAGGATC 121886 28 100.0 83 ............................ TTTATCAACAGGTCTTGCAAATTTACAGCTTCCTTCACTGNNNNNNNNNNCGTGAAAATTTGATATTTTTGAGAACTCCCTAT 121997 28 100.0 32 ............................ TGAAAAATTTTTGAGGCTTGCAAATAATCGAT 122057 28 100.0 32 ............................ ATACCAATTATTAAATCCAAGAAAACAAGCAA 122117 28 100.0 32 ............................ TTTTCAAAAACTCCTCTAAAAAACTTCTTAAT 122177 28 100.0 32 ............................ TAACGCACAAAATAGTTAATCAAATTTGGGTA 122237 28 100.0 32 ............................ TGTTGAAAATTACATTTCTTGCAAGAATAGGG 122297 28 100.0 32 ............................ ACTCACACAACTTGTCGATTAAAAGTGTATTT 122357 28 100.0 32 ............................ TTTTACTATACTAACCAGCATTCCACTTTCTC 122417 28 100.0 32 ............................ AAAATCAAAAACATCTATTTTTGCTGTACAAA 122477 28 100.0 32 ............................ ACACTTTGTGGGAAATATTCATTATTGATTTT 122537 28 100.0 32 ............................ ATGATTACCTACAAAGGAAAGATAGTGGAAAT 122597 28 96.4 32 ........................T... TATACAACAAATCAGGTAAAGGTAACATTCTA 122657 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================================================================== ================== 56 28 99.9 33 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATGTTGAAAATTACATTTCTTGCAAGAATAGGGCTTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATATACAACAAATCAGGTAAAGGTAACATTCTACTTCACTGCCGAATAGGCAGCTTAGAAATTTATCAACAGGTCTTGCAAATTTACAGCTTCCTTCACTGCCGAATAGGCAGCTTAGAAAATAGTAAAGCTCGACCTTCACAAGAGCAACTTCTTCACTGCCGAATAGGCAGCTTAGAAATTTGATAAAAGATTCGATTACTGATCGGGGCACTTCACTGCCGAATAGGCAGCTTAGAAAAACAGATTCAGCGCCTATTTCTCGATTTCGGTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 122942-127172 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJK02000067.1 Aggregatibacter actinomycetemcomitans serotype a str. H5P1 contig00085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 122942 28 100.0 32 ............................ TTTATCAACAGGTCTTGCAAATTTACAGCTTC 123002 28 100.0 32 ............................ ATAGTAAAGCTCGACCTTCACAAGAGCAACTT 123062 28 100.0 32 ............................ TTTGATAAAAGATTCGATTACTGATCGGGGCA 123122 28 100.0 32 ............................ AACAGATTCAGCGCCTATTTCTCGATTTCGGT 123182 28 100.0 32 ............................ TAAAGCAGATGTACGAAAGATTCGTTTTATTT 123242 28 100.0 32 ............................ ATTGATTGTAGGTTTGAAGTTCATAAGGAATG 123302 28 100.0 32 ............................ GTTTAATCATATAATTTCCATGAATTTTAACC 123362 28 100.0 32 ............................ AACAAGTCTTAATTTTTTCCATTAATTTTTTA 123422 28 100.0 32 ............................ GGTGATTGTCGAGGGTCTTTGTAAGATTTACG 123482 28 100.0 32 ............................ CTTGCTTTTAAATAACAAAATTTTTGGTATAT 123542 28 100.0 32 ............................ AAAGCACAAGCTGAACAAGTTAGAAATGAACC 123602 28 100.0 32 ............................ ATAGCCCCTATATCAATTGGCGGCATGTAATT 123662 28 100.0 32 ............................ ATAATTACTGCTCAAGATATGCATTTTGCAAT 123722 28 100.0 32 ............................ ACGCACAAATTGATATAAATCAACCGGTTGGC 123782 28 100.0 32 ............................ TGTTCCCGAAACATTGTAGGCACGACCACATA 123842 28 100.0 32 ............................ TATGGATATTTTAAGAAATTTAGATATGTTTT 123902 28 100.0 32 ............................ TCCAAAACTATATGAAGACCCCACTTATCTAA 123962 28 100.0 32 ............................ TTTATATTCCGCCCGATTACACCGCCAAACCG 124022 28 100.0 32 ............................ TCTTCACTTCAAGATTGCAAAATTGCCCGTGA 124082 28 100.0 32 ............................ AACCAAGACCAAACACTTTCAGATTATGAAGT 124142 28 100.0 32 ............................ TTGTAGAAATTTGAAATGTTTTGCGTTTATAC 124202 28 100.0 32 ............................ TTATATATATCGTATAAAAAATGAACAAAATA 124262 28 100.0 31 ............................ AAATCTGAATAAGCAAAAACATTTACATATT 124321 28 100.0 32 ............................ TTGAGCCCATGCCGGTGGTGCAACATTTTGAC 124381 28 100.0 32 ............................ AAATCGATAATGTAAATAATCGCATTGACAAC 124441 28 100.0 32 ............................ TGCTCAAGCACCGGTTCAACAAGCAGTAGGCA 124501 28 100.0 33 ............................ CAAAAGAAACTGTGATGTTTTAACAGTACTAAT 124562 28 100.0 32 ............................ GTTTGTAGGCAGTATTTTAAAGTATTGTTTTC 124622 28 100.0 32 ............................ TGATATGGGTTTCGTTATTAACACAATTTTAT 124682 28 100.0 32 ............................ TACAATCAAAACTCCAATTTTTTGCCCTTTTA 124742 28 100.0 33 ............................ ATTCTAAGTTAGGTTGATGATACGGGATATCAT 124803 28 100.0 32 ............................ ATAAGAAGATAACCATCTGAAATAGTTTTTGG 124863 28 100.0 32 ............................ AATGCCTGTTAGACCCAACAAAACAAAGTAAT 124923 28 100.0 32 ............................ ATAAACAGAAGATTCAAGAAAATCCAACAAAA 124983 28 100.0 32 ............................ ATTTTCCACTACATTATTTTTTATCTTACTAT 125043 28 100.0 33 ............................ CATCGGAAGTAGTGTTAAATTTAATGGCTTACG 125104 28 100.0 33 ............................ CAAAAATGCAATTACGTAAAGTGCTACTGGACC 125165 28 100.0 30 ............................ AAAAAGCCAAGATTGTCTACAAAGAAAGGA 125223 28 100.0 32 ............................ ATATTAAAAACAGGCTCTCCTTTTAATAAAGG 125283 28 100.0 32 ............................ ATTAAGACGGGAAAATAACCATAAGGAAAAAT 125343 28 100.0 32 ............................ ATTGATTGTAGGTTTGAAGTTCATAAGGAATG 125403 28 100.0 32 ............................ GGTACCGTTCAACAATAAGATTGGTACTTTCG 125463 28 100.0 32 ............................ AATGCCTGTTAGACCCAACAAAACAAAGTAAT 125523 28 100.0 32 ............................ CATTATGATTACTAACTAAATCATTAAACCAA 125583 28 100.0 32 ............................ AAGAAAACAAGCAAGTGTTACTAATCCAACAA 125643 28 100.0 32 ............................ ATTCAAAATTTGCTTTGCTTGTGATATATCTT 125703 28 100.0 32 ............................ TTTACTTTTTCAACACTTTTTAAAATTTTTCT 125763 28 100.0 32 ............................ TGAAACAAGTTCTCCTAAACCGACAAAACTAT 125823 28 100.0 32 ............................ AAGAAGAAAGTATCAATGCTTTACTTTCATAT 125883 28 100.0 32 ............................ ACAAGAAAAACCTTTGCACTGGGCTCAAACTT 125943 28 100.0 32 ............................ ATATGCTGTTTCTGATTTAGTTATTCTATTAG 126003 28 100.0 32 ............................ CCTGAAGCAAATCAATTTGACACATTTGCAAT 126063 28 100.0 32 ............................ ATCGAAAGGTATTTCAATAGGTAAAGATAATT 126123 28 100.0 32 ............................ TGAATATTTAATAAAACAATTATTAATCTTAT 126183 28 100.0 32 ............................ TAACAAATCCTTTCGGCGTTTGATGAGTAAGT 126243 28 100.0 32 ............................ TTTTCCAGATGGTGAAAATTCAGCATAAGTAT 126303 28 100.0 32 ............................ TAGCATACCATAATACAAAAACTAATCATGGA 126363 28 100.0 32 ............................ TTTAATAAAAGATTCAATAACTGATCTAGGTA 126423 28 100.0 32 ............................ AAAAGCGATCGCATGCTCCGCAACTGCAAAAA 126483 28 100.0 32 ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 126543 28 100.0 33 ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 126604 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 126664 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 126725 28 100.0 32 ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 126785 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 126845 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 126905 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 126965 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 127025 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 127085 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 127145 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 71 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : AAAAAAATCAAAAACATCTATTTTTGCTGTACAAACTTCACTGCCGAATAGGCAGCTTAGAAAACACTTTGTGGGAAATATTCATTATTGATTTTCTTCACTGCCGAATAGGCAGCTTAGAAAATGATTACCTACAAAGGAAAGATAGTGGAAATCTTCACTGCCGAATAGGCAGCTTATAAATATACAACAAATCAGGTAAAGGTAACATTCTACTTCACTGCCGAATAGGCAGCTTAGAAATGTTGAAAATTACATTTCTTGCAAGAATAGGGCTTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATATACAACAAATCAGGTAAAGGTAACATTCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGAGAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAAGCTACCGCGATTTATCCCTCGAGAAGCAAAGTACCAAGCCATCACGACGTTAAAATCGCGCGGAATCAAACGACTTTGTGCGCTGTTTGAGGTGTCTGAAAGTGCGTATTATGCCTAATGTAAAGCGGTAAAAACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //