Array 1 13025-14180 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABC01000080.1 Dickeya dianthicola strain NY1559C NODE_80_length_20918_cov_13.7653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 13025 32 100.0 34 ................................ AGGGAAACCCGGCGAGGCACGGTATCGACTGGAG 13091 32 100.0 33 ................................ TTCAAATACAGTTCACATGCAAGATGCAGCTTC 13156 32 100.0 35 ................................ TTGAAATCATGGACTTCGACAACACCGCATATCAA 13223 32 100.0 37 ................................ GATATCAGTCTGACTGAAGCCAGATGGGTCACCAGCC 13292 32 100.0 35 ................................ AGTATTTAGTGAGGCTGAATTCAGCCCAGATGTCT 13359 32 100.0 34 ................................ CCAGACATCGCTGAAGCTGCGCTGAAGACCGAGA 13425 32 100.0 34 ................................ TATTAGAAAAGTCCCTTAATTAATCCCTTACGAA 13491 32 100.0 34 ................................ AATACCATGACCCGTTTGGTAAACAGCATCACTG 13557 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 13622 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 13689 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 13755 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 13821 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 13887 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 13953 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 14019 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 14084 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 14150 31 81.2 0 .....................-AC....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : TGATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAGGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1464-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABC01000128.1 Dickeya dianthicola strain NY1559C NODE_128_length_10739_cov_12.2997, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1463 28 100.0 32 ............................ TCCGGTGCTCTGAGTCGTTCGAGTAGCTGGAA 1403 28 100.0 32 ............................ TATAAAAGAGAGTCGAGCGGTGAACCACATCG 1343 28 100.0 32 ............................ GAGAGGACTGAGAGAGCGTACCCACGCAATCC 1283 28 100.0 32 ............................ CATATCCATACCCCACCACCCCGGCGCGCAGT 1223 28 100.0 32 ............................ GTATTCTGGAGCGCCACCAGTGGCGTGGAATG 1163 28 100.0 32 ............................ AGGAAGTTGGCGTTGAACTGCGTGGTGATCCT 1103 28 100.0 32 ............................ TGACGGCGGGGATCGAGGTCGGTGTGTTGCGC 1043 28 100.0 32 ............................ GTTACGTCGCCAACCGGCGACGCTTGGAGTTC 983 28 100.0 33 ............................ TCCTCGGTCAGACGCTCATTCTTCGGGTCATCT 922 28 100.0 32 ............................ GTACGGTGCCCTGAGTCGTTCGCGGTCACTCG 862 28 100.0 32 ............................ GAGTGTACAGTGATAGGTTGACGGGTAGATTC 802 28 100.0 32 ............................ GCTAGGGAACTAAGTACAGTACACGAACTCAA 742 28 100.0 32 ............................ ACACCCGAGAGACGGCACGCACCCACCAGGAC 682 28 100.0 32 ............................ TCCTCGTTCGTTTCTCTCTCTCTATAGTGACA 622 28 100.0 32 ............................ ACAAGGACAAACAGCGCGCGGCATTCAGTACT 562 28 100.0 32 ............................ CGCACACCTCCCGCACACCTCCCGCACACCTC 502 28 100.0 32 ............................ CGAACGAAAGGCCACAGGTTGCTGCGTATGGT 442 28 100.0 32 ............................ ATAAATCCACCGTGCCGGGCGGTCTGGTAAAG 382 28 100.0 32 ............................ TCCAGATTGCGTTCAGAGAGCTTCGTAGCCAG 322 28 100.0 32 ............................ TGTACCTGCACAGCACCGACGTACAGATAAAT 262 28 100.0 32 ............................ AGCGGCGGCATTGAAGTACCGATGAATACAAC 202 28 100.0 32 ............................ TTTAATGACACGGCCAGTGTTAATGTTATTCA 142 28 100.0 32 ............................ TTAACGGACGGCTTAACGCGTTGGCCGTTTGG 82 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AACGACAAAAACCCGGCAGGAAATGCGATCTCGCGTTCACTGCCGAGTAGGCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10179-10686 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABC01000128.1 Dickeya dianthicola strain NY1559C NODE_128_length_10739_cov_12.2997, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10179 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 10239 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 10299 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 10359 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 10419 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 10479 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 10539 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 10599 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 10659 28 92.9 0 ........T..T................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : CATTTGATGAACGGGCGGATCACTGGACACCTGTTCACTGCCGCATAGGCAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //