Array 1 382445-383794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024726.1 Prevotella intermedia strain KCOM 2838 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 382445 36 100.0 29 .................................... AGGCAAGGGACACGAAACTTATCAAGAAA 382510 36 100.0 29 .................................... CCATCTAATCGAGAGCGTTTGTAAGTATG 382575 36 100.0 30 .................................... AGACAAAGGTCACACCTATTACTGATGATG 382641 36 100.0 30 .................................... TAAATTTAAGTGTTAAGAGAAAGGAACCAT 382707 36 100.0 30 .................................... GATAAATTCTGTTTTAATTACTTGTTGTGT 382773 36 100.0 30 .................................... AGTATTACCTGTTTGCTTTTGACCAGCCAC 382839 36 100.0 30 .................................... ATGATTAACCAACTCCTGCTGAATGTTTGA 382905 36 100.0 30 .................................... AACATCGTAATCAAGCACAAAGCGGGCGAA 382971 36 100.0 29 .................................... TCCAGCACAAGCATTAACTTCTGGTGTTC 383036 36 100.0 30 .................................... CTTGATAATCAAACCATTCTTTAATACATT 383102 36 100.0 30 .................................... TTATCTATCATAGTGCTGATGCGAATTTTA 383168 36 100.0 30 .................................... TGATAGATACTTAAAACATCTAAAACTTTA 383234 36 100.0 29 .................................... AAATTCTGTCAATGTATTGATAATCCTTT 383299 36 100.0 30 .................................... GATAATCAACTTATCGGTTAGCGGACGTTT 383365 36 100.0 30 .................................... TGCATTCTGCTGTTACATTATCAAAAATGA 383431 36 100.0 30 .................................... GCCGTATTTCTTCAAAGCATACGTGCATAT 383497 36 100.0 30 .................................... TACCTATAACAATGTTTTCGATGTGTTTCT 383563 36 100.0 29 .................................... CAACCACACATTGTTATGAGGACGCAAAT 383628 36 100.0 29 .................................... GTCTTTTCGTCAATGCTTTTGATAGATAC 383693 36 100.0 30 .................................... TGAATTGAAGCACTTTAACAGCATTTTCCG 383759 36 91.7 0 ................A.........C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.6 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTTGAGAATATTGAGCGTGCAAAGTATGAAGCCATACTGAATGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGTGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATCTATCTATCAAAAGAGGTTATGTCGCTGATATTTAAATATAGAACCCTTGTTCATAAACTTTTGCTTGCTAAAAAGAATAACCCCGATGAGAAGATAATGATAGATAAACGAGAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAAAGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGAGTGGTGGAAAGAAAGCAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : CTTATTAACAAGCAAGGGAAGGGAATTGGGGGAAGTAAAAATGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGCAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGGTTCGGGCATCAGCACAAGGGCGGCTTGCCGACAGTGCGACATCGGCAAGGGTGGTTGGGGCTTCTGCATCGGCTCAATGCGGTGGTTCGTTCGGTTCTGTTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGTTTTCTCATATCGTTATCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1584317-1586743 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024725.1 Prevotella intermedia strain KCOM 2838 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1584317 47 100.0 30 ............................................... TTCTTGATGCCACTGTAAACCGAAGTGCTG 1584394 47 100.0 30 ............................................... TCGAAACTGTGAACATCTACGAGCAAGATT 1584471 47 100.0 29 ............................................... TTTCTTTCATTTTATCAATTTTTTATTGT 1584547 47 100.0 30 ............................................... ACTTCTCATTTGCTTTTTATTTACTGTTAT 1584624 47 100.0 30 ............................................... TGCTGACGCTGCCGATGCAGAGCTTGCTGA 1584701 47 100.0 30 ............................................... AGCTTCATTCTAACTTCAAAGAGTGTGTTG 1584778 47 100.0 30 ............................................... CTATATCGTCGTGTTTGTTCGCTCCAAAGT 1584855 47 100.0 30 ............................................... CTACTTCGAGAACTTGCCCGAAGATTTATT 1584932 47 100.0 30 ............................................... GGGCTTACACCATCAAAGTACAGCGTATTG 1585009 47 100.0 30 ............................................... GAACCCTATAACCAAGTCTTATGCACCTAT 1585086 47 100.0 30 ............................................... TGTTTCCGCTCATCAGACAAAACCGCTTGA 1585163 47 100.0 30 ............................................... TTCCTTTGGTAACTTTAATATAGCATTTGT 1585240 47 100.0 30 ............................................... GAGTATGTCCCGGAAAATTATCACTGATAT 1585317 47 100.0 30 ............................................... GTAAAGACCGATATGAAAGAGCCGTGGAAT 1585394 47 100.0 30 ............................................... GACATCAACAGTATATTGGATTTGGTCTTC 1585471 47 100.0 30 ............................................... AAGTAATCGTACGTCTTTTCGTCGCCGTTG 1585548 47 100.0 30 ............................................... ATCCGTGAAGTCATCAGGGTTGAACAGCTC 1585625 47 100.0 30 ............................................... GCCTGGCGGTGATTTAGGAACTGACGCTCG 1585702 47 100.0 30 ............................................... GTAGAATGTTGGAGCTGGAATTTAGGGTAT 1585779 47 100.0 29 ............................................... AGTATTTTTTGTATATCCCCCTCTTTCAG 1585855 47 100.0 30 ............................................... TGCCCGTATGGGTGTATATTCTTTGTCGCA 1585932 47 100.0 29 ............................................... TGTTTAACATTTTTCTATCTTCGTCGTAC 1586008 47 100.0 29 ............................................... ATACAGCGCAAAGAGATAATTCCTTACAG 1586084 47 100.0 30 ............................................... GCGGCAATATCATCATGAAGCCGCTCAGCA 1586161 47 100.0 30 ............................................... CGGGCACAACGGCTCGACATTTACAGATGG 1586238 47 100.0 30 ............................................... GGCGGAAATTGAAACCATGCAGGAAGGTCT 1586315 47 97.9 30 .........G..................................... ACAGTGTTATTGGTATACCTCTCAAGAGAG 1586392 47 97.9 30 .........G..................................... ACAGTGTTATTGGTATACCTCTCAAGAGAG 1586469 47 97.9 30 .........G..................................... GCACAAATCCGTAGTTTCCGTTTGCCACGA 1586546 47 97.9 29 .........G..................................... AAGAACAAAGAAGCGGTCTTCATAAGACG 1586622 47 97.9 29 .........G..................................... ACACCCACTAAAAGATATATTTACAAGCA 1586698 46 91.5 0 .........G..................C........-....C.... | ========== ====== ====== ====== =============================================== ============================== ================== 32 47 99.4 30 GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGCTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATCAAAAGAGTTTCCACCTTTATTCCTGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGCAAGAAACCACAAAAGCCAAATGCACCTGGAGCACAATTAGAACTCTTTTAACCCTTCTTTTAGAAACAATAAAGTTCCATTCTTGACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAACACTGATATTCATTACTTTAAGCCATTTGA # Right flank : CTAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGAAAAGGGGAAAATAGAGAAAAAGAGAGCAGGAAAATAGGGGTTGAAAAGTGAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTGCAAGAACGGCTCTTTTGCAGAGCGAAAAGATGATGATGGAGCGAGAAATATAGCCTATATACGAATAAAAGTGTTCGTTTTACAACACAAAAGGTGCGATTTCGTTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGGCGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAATTCGGAAGTTGAGGCTTTGAAATTTAACAGTTGCGGAGTCGATTTAACGAATATTCAGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //