Array 1 33563-34970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSR01000030.1 Pseudomonas aeruginosa strain AZPAE14898 AZPAE14898_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33563 28 100.0 32 ............................ ACGACAGCCAGCGGATACGGGAACTGCGACGG 33623 28 100.0 32 ............................ ATCCGAAGGCGCCGGCAGTATGACACCCGCCA 33683 28 100.0 32 ............................ TGTACGCGACCCTTGGGAAGTACTCAAGGATC 33743 28 100.0 32 ............................ AGCTGATGCAGCATCGGCAGGTCCAACCCACC 33803 28 100.0 32 ............................ ATCCTCGCCCTGCTGGACGAGATCGACCAGCT 33863 28 100.0 32 ............................ CGGTCCTGCCAGTACTGCGGCAGGATCTGGTC 33923 28 100.0 32 ............................ AGCCTGGCGCCCTTCGAGTCCATCCAGCCCGG 33983 28 100.0 32 ............................ CATCCAATTCGCCGATCCGGCGCAAGCGCCCG 34043 28 100.0 32 ............................ ACGAAGCAGATCGCCGAATGCGGCGTCAGCGC 34103 28 100.0 32 ............................ GTGGGTGCAAATCGCGATTCTGGTCGCGTCGT 34163 28 100.0 32 ............................ TGAATATCAGCCTGCAAAGCGTCGTCGTAGTA 34223 28 100.0 32 ............................ AAGCCGGGCCGATGTTCGAGCCTGGCTGCGTG 34283 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 34343 28 100.0 32 ............................ ATGCGAGGCTGATCGAGGTGCGCGGTTCTGTT 34403 28 100.0 32 ............................ GTGCGCGGATGGCTGGTATCTCGAGCACGATT 34463 28 100.0 32 ............................ AGGCAAACAACGGAAAGATCACCACCGAAGGC 34523 28 100.0 32 ............................ AACGAAACAGGCCCAGCACAGCCGCTTGATAA 34583 28 100.0 32 ............................ ACAAGACGCTCATCGACGGCAGCATCGAGACG 34643 28 100.0 32 ............................ AAGGTGACGATGCACAGCTGTTGCGCGCGGTT 34703 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 34763 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 34823 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 34883 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 34943 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCAAAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44969-43494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSR01000030.1 Pseudomonas aeruginosa strain AZPAE14898 AZPAE14898_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44968 28 100.0 32 ............................ GTCATGATGTCGGCGCTGACCTGGCCGGTCAT 44908 28 100.0 32 ............................ AAGTGGCTGAACTCCGCCTCGGATTGGAGCGA 44848 28 100.0 32 ............................ ATGCAAGGCGCCAGTCTTTCCAGCAATCGCCA 44788 28 100.0 32 ............................ AGGCGCTGGGCTTCGGCATACTGCTCCGCGGC 44728 28 100.0 32 ............................ CACCGGGGTGGAAGTCATCGGCAACTCTATCC 44668 28 100.0 32 ............................ GCGAACTCCGAGACTGATGCGACGCGCCTCAG 44608 28 100.0 32 ............................ ACACATCACTGTTCTGCGGTACGTCGTGCCAT 44548 28 100.0 32 ............................ ATTGCAACGGCCCAATTAAGCGCTGCCCCCTC 44488 28 100.0 32 ............................ ATCCGGAGCCGGCGGCGAAGACTCCGCATTCC 44428 28 100.0 32 ............................ TCGATCTGGCTGATTGGCTGGGGCGAGAACAC 44368 28 100.0 33 ............................ CTGAACCTGTCGAAGCCTTGCCTAGGCACCACG 44307 28 100.0 32 ............................ ATCACCGGCGCGCTGGCCTTCGGCGCCCAGGC 44247 28 100.0 32 ............................ TTATCAGTAAATACGTGGCGACTTGGCCACCC 44187 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 44127 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 44067 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 44007 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 43947 28 100.0 32 ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 43887 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 43827 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 43767 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 43707 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 43647 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 43587 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [43563] 43521 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //