Array 1 535062-536554 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUU01000002.1 Salmonella enterica isolate STY152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 535062 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 535123 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 535184 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 535245 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 535306 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 535367 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 535428 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 535489 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 535550 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 535611 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 535672 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 535733 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 535794 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 535855 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 535916 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 535977 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 536039 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 536100 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 536161 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 536222 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 536283 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 536344 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 536405 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 536466 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 536527 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 552686-554589 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUU01000002.1 Salmonella enterica isolate STY152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 552686 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 552747 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 552808 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 552869 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 552930 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 552991 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 553052 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 553114 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 553175 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 553236 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 553297 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 553358 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 553419 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 553480 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 553541 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 553602 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 553663 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 553724 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 553785 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 553846 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 553907 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 553969 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 554072 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 554133 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 554194 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 554255 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 554316 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 554377 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 554438 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 554499 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 554560 29 100.0 0 ............................. | A [554587] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //