Array 1 88908-91453 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134526.1 Neisseria meningitidis strain NCTC10026 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 88908 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 88974 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 89040 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 89106 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 89172 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 89238 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 89304 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 89370 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 89436 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 89502 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 89568 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 89634 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 89700 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 89766 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 89832 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 89898 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 89964 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 90030 36 100.0 30 .................................... AAATTGTATTAGCTTTTGCACAAATTTATC 90096 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 90162 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTGTACG 90228 36 100.0 30 .................................... CTTCCGCACTTCCAGGGGTTAAATCGGGAC 90294 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 90360 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 90426 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 90492 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 90558 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 90624 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 90690 36 100.0 30 .................................... GCGGGTTTCCTGTGTGGCGCGTGAATTTAA 90756 36 100.0 30 .................................... AGATTGCGACATTGAAGAATGTAGCGACTT 90822 36 100.0 30 .................................... CCAAAAAATCTACACAAGCATGGAAATCAC 90888 36 100.0 30 .................................... ATACGCGCCTCGCACTTGTCCACTCGAGCA 90954 36 100.0 30 .................................... ACCTGTTCCGTCCTTTGCTGTTCGTCCTTA 91020 36 100.0 30 .................................... CCTGAGCATCAAAACAGGCGGAAAATTGCT 91086 36 100.0 30 .................................... GACAGCCAACAGCACGAAAGCAACGGCGAA 91152 36 100.0 30 .................................... CCCTTCGCTGTATCAAAGTCAGAGAAAGCA 91218 36 100.0 30 .................................... CCGGGATAACCGGTTGCCTTTATGTATTTG 91284 36 100.0 32 .................................... TACATCGACGAAATCGCGCGCGCGCGCACTTT 91352 36 100.0 30 .................................... TCCGTATAGATATGGTTGACATCTACCGCG 91418 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 39 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //