Array 1 47796-46506 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUU01000115.1 Neisseria meningitidis NM3222 gnm3222.contig.114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47795 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 47729 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 47663 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 47597 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 47531 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 47465 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 47399 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 47333 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 47267 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 47201 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 47135 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 47069 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 47003 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 46937 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 46871 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 46805 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 46739 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 46673 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 46607 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 46541 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //