Array 1 3808-3404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000064.1 Calothrix anomala FACHB-343 contig64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3807 37 100.0 39 ..................................... TTTCTCCTCATATTTATAAGCCCAATACCAATGCTCTGG 3731 37 100.0 36 ..................................... TCTTACATTGATGGGGAATTGATAAATAATTTGTGA 3658 37 100.0 33 ..................................... AAATATCTGTCAAGATATCTATTACAGCGCAGA 3588 37 100.0 38 ..................................... AAAAATGTTTTTGTCGGGATCTACCAACACGGCGCAAT 3513 37 94.6 36 ...........T.................G....... AAGGCCTGTCCCTGATGCTAGGTCTAACTACTGCAT 3440 37 94.6 0 ................................T...G | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 98.2 37 GTTTCAAAAACCTATTACCCCGCAAGGGGATTGAAAC # Left flank : AAAAGCTGATGGAAAACGGAATTGATTTACCCTTCCCTACCCAGCAAATTCTCTTTCACGATCAGACAGAAGAAACAGATGGCGATCGCTCTCGTCAACGCGAAGGTTGGCCTGCTGTTAAAGGTAAAGTCCCAAAGCCTCGCCGCATCAGCGATTCACTCAGGTTGCTTGCTCAGTCTCACACCTCATCAGATGGTAATCACAAAGTAGATTCTCACAGCAATCAATCTTAAAGAACTACCAAGGAATCTCTCGCCAAGAGTTGAGTATAATTTGATTATTCATGTGTTAGCTTGACATTTGGCATATCCAAGCGGGTGTAAAAACCTGGGGGGTTCCGCCAAAAACGCCAGAACCTTGACAAATCAATAATTACAGGGTTTCGAGTCTTCGGGAAGTTGCAAATTAGTTGCAATAAGGTAGGCTGAAAACGACCATTTTTTTCGATCTGCCAAAATCCTTCCCAGAAAGCCTACGGTGTATTAGTTTCAGCACCCGGG # Right flank : AAATATATTATTTTCAAAAAAAGCGATCGCCTAACGAATTACTCAATAGACTTCTTGCAAAAATTCTTATTCTTAGCTTCTTCTTTGCGTCTTTGCGCCTTTGCGTGAGACAAAAAAATATTTATGCAAAATGTCTAATGACAAATGACAAAATTACTCCTCAGCCAACTGACTTACAATTCTTGCAAATTCATCTGTCATCCAATCATCACCAGTTTCACGATAAACTTCCAACAACGACTTATAAAACCATAAAGTCTTTTCCCTACCAATTTTTAAGTGACTCCAAACAATATCACCATATATCCGCGAATCTATTAATAACGATCTAGCATTATGCAACTTATCTGCTAAAGATACTCTGCGCACAGAAGCAGAAGTATGACGCAGATTTTCTAAATATCTATTTTTACGTTCTTGCCAAGGTGGTTTAGGTAAACTATCCCATTCTGTACAACCATCAATTATTTCTACAACTCTATCGCCAAAACGTTGACGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAAAACCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 42225-41927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000067.1 Calothrix anomala FACHB-343 contig67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================================ ================== 42224 41 100.0 43 ......................................... CGATGCCGTGTCTTATCATTATTAATGTGCAATAGGTCGTAGG 42140 41 100.0 48 ......................................... CCATGCCGTGCCCCTACTGAGCGTATCTACTGCAAACAAACTTATAAA 42051 41 100.0 43 ......................................... GGATGCCGTGTCTTATCATTATTAATATGCAATAGGTCGTAGG 41967 41 97.6 0 ...................................A..... | ========== ====== ====== ====== ========================================= ================================================ ================== 4 41 99.4 45 GGCACGGCACAGATAAAATATCGGATTTACCGAAAGTCTGT # Left flank : AAAGCAATGTTGGTTTGGCGATGTCATGAATGGGGAAATGCAACATAATCAATTGGGGATAATTGTTTATACCTTTTGGCAGGCGCTTCCGCGTCGGTTTTCTCACATCGAATTAGATGCTTTTGTCGTTATGCCAAATCATGTGCATGGTATTCTCATCATCACCGATGCCGTGCCCCGGCAACCAACAGCAGAACAATTTGGTAAACCTGTTCCTGGTTCTATTCCTACAATTATTCGTGCTTTTAAATCAGCTGTTACCAAACGAATAAACCTAATGCGAAAAAGGCCATATCCTCCTATTTGGCAACGCAATTATTACGAAAGCATTATCCGGCAAGATGGATTGGATAATGTACGCCAATATATTCTCAGTAATCCTTTTGCATGGGCAGAGGACGAAGAAAACCCTTCGCATCACCCACAAGCACAACTAGATTTAGATGTATATTTTTGAACCCACATTACCTATAAAATTAGCAAATAATTTTCCCAGTAGG # Right flank : GGATGCCGTGCCCCTACTTAGGGTTTCTACTGCAAACAAACTTATAAAGGGTGCTACTTTTAGCTAAAAAATCGAGTCAAACTTATAAATAATCGACTCAAACTAATAAAGACTTATACTTTTAGCTAAAAAATCCAGTCAAACTTATAAATGATTGACTCAAACTAATAAAGACTTATACTTTTAGCTAAAAAATCAAGTCAAACTTATGAATAATCGACTCAAACTTATAAAAGTCGCTGTTTTTAGCTATCACCAAAACCCCCTCCCCCTGGTGTTTCTATCACAAAAACATCTCCCACTTCCATCTCAACAGTTGCAGTACTATCTAACTCTTCTTGCGTTCCATCCTGACGCTGTATCCAGTTGCATCCAACTTTTCCCGGTTCCCCACCATTTAAGCCAAAGGGAGAAACACGGCGATGATTAGAAAGAATATTCGCTGTCATCGGTTCTAAAAACTTGATGCGACGAATCACGCCATTACCACCGGAATACTT # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCACGGCACAGATAAAATATCGGATTTACCGAAAGTCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.10%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 56015-54813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000062.1 Calothrix anomala FACHB-343 contig62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 56014 37 100.0 34 ..................................... GAATAAGACTAACAGCAGCAAAGCGGCATCTAAA 55943 37 100.0 34 ..................................... AACCAGGAAAAAGATCGCAAGACAGAAGCTAAGG 55872 37 100.0 35 ..................................... CTCTCAATGCGAAAATAATTGGCAAGTCTTGGCGG 55800 37 100.0 35 ..................................... CTTTACATGTTAGTTAGCGTTTATCCTTCTGTTTA 55728 37 100.0 34 ..................................... AATATATCTAGTAAGAAATTGCTTTCCTGCGGCA 55657 37 100.0 45 ..................................... ATACGTTACTTTGTCCTTATTACGCCATACGTGACACGCTACAGG 55575 37 100.0 37 ..................................... TTTACGATTGGGTAAGTTTGCCGTTGCCCATGCCAAG 55501 37 100.0 33 ..................................... GTTAGATATATAGGACGGTCAGTTAACCCTAAG 55431 37 100.0 35 ..................................... CTTGAGTAACGCCAGGAGACAGGATGGCTTCCTTG 55359 37 100.0 37 ..................................... CCGGATAAAGTTTATTGTTGTTAAGTAAACCCGATTC 55285 37 97.3 36 ..........C.......................... ATGGTTTTATCTGAAGTCTACCGCGTAACTTACGAG 55212 37 97.3 36 ..........C.......................... TTGCTGTCTGTAGCAGCATCAATATTTTTTCGGGTG 55139 37 97.3 36 ..........C.......................... GAGATTGAACCTCTTACACCCGCTTGGGTTAACCAA 55066 37 97.3 35 ..........C.......................... GCTACTCAGCAGAACAATCAAGAATTGCGGCTGAA 54994 37 97.3 36 ..........C.......................... TATTTAATTGTCCGCTAGGGCCAATTAAAGTTTTAG 54921 37 94.6 35 ..........C...........T.............. CAGGGCGAATTTTACCCCCTTCAAAAAGCCGAACT 54849 37 86.5 0 ..............................A..TTGG | ========== ====== ====== ====== ===================================== ============================================= ================== 17 37 98.1 36 GTTTCAAATATCTATTACCCCGCAAGGGGATTGAAAC # Left flank : AAATAAGTAACGCTAACAACTGTGTCATAGATTTAAGTTAGATTTCGCTTAGTTAATACCAATTGGCTGTCATTAGTCATTTGTCATTTGTCATTGGTAAAGATTTTGTAACATACAGCATATTTGCAGGTAAATGAGGTAGGCGCTTCGGGGCATGGCAGTGCCAATGCCCCTACAATCAATGATTATCTGGACTTCTCCAACTGGCAATCTGCTGTATTTTCTGTAAATTTTCTAGTGCTTCTGAAATTTCGGTAATAGATTTGATATCATCCTATTATTGATGTGTTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCAAAAACCTGGGGGGTTCCGCCAAAAACGCCAGAACCTTGACAAATTAATAAGTTTAGCCTTTGGAGATTTGGCACAGTTGCAAATTAATTGCAATAAGGTCGTCTGAAAATAACCATTTTTTTCGATCTGCCAAAACCTCTGACAAGATGGTTGCTGTGTATGGGTTTCAGCACGAAGG # Right flank : GTTTCGTTCCTCAACCCAACCTACGAAATTTTAGGTTTTTGAGGGTAAAGGAATAGTTTTGCCTGAAAATAAGGGTTAGGGATGCTTACTGCAAAGAAAAAATAGGGTTGCTAAATTAAGGGACTATTTTTCCCCGCAAGGGGATGAAAATCAGCCGCTTACGACGTATATTTTTTACTTGCTTAAATGCTAAACAACGAACTTAACTTTAACTCTCTTCCCTTCTGCCATCTGCCTTCTGCCATCTGCCTTTATGCAAAAAATATCCTGAAAAAAGGAAGCACCTGATAACTATGGAGTTCTGGAAGGAATTAAATCGTTAAATTAAGCAGATTCAAACACGCCAGGTGGAATTGGTACGAGTTGAGGAGACGACAAGCAAGTTCCTTGACGATACCATATTCCTTCAGTCTCGAAGATCTCAAATTGAGTGGTCAAAATTGCCCATGCTTGTTCATTGAGACCGGCTGAATAAGTCCAAGTAAATTGTTGATGACTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATATCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : GTTTCAAATACCTATTACCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 24108-24952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000088.1 Calothrix anomala FACHB-343 contig88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 24108 37 100.0 34 ..................................... TTGAAGATCTTTGCTTTGGAGAGTAGAGATATAG 24179 37 100.0 36 ..................................... CAATGGAGTACCAAGGAACTGCACAAATGTCTATAT 24252 37 100.0 37 ..................................... AAACTCTTTAAGATACCCTCTGACTAAATCAAAAGCA 24326 37 100.0 35 ..................................... ATTAACTGCTATGACTCCCTGCTTTAATTCCTGTA 24398 37 100.0 38 ..................................... CAATCTGGCGAAGATAAAACTAATTGAATCTCTGCGAC 24473 37 100.0 36 ..................................... CAATCTGTCCATGCTGAACGCCCTCAGAAAGTCTGA 24546 37 100.0 35 ..................................... ATACGCAAAAACTACCTAACAGGTAAGCGTGTTAC 24618 37 100.0 39 ..................................... CTCTCACCAAAGAAGCAACTGCCAAACAGCAGGGATTAG 24694 37 100.0 36 ..................................... CTCCGCCGGATACGGTTATATCTAAATCGTCATCAA 24767 37 100.0 37 ..................................... GCCTATAATCAAGGTTTAGACACCCCAGAATATTCTA 24841 37 100.0 38 ..................................... AAAATCTATTTCTGAATACATCAGCCGCCAAGAATTAA 24916 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.8 37 GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAAC # Left flank : GTTTGAGCTAACACCTGGGTATTTGCAACTACTTGCGCCGTTAAAACTGAATCTTCAGCCAAGCCAAAGCTTACCAATCCGCCATCAAGAAAAAAAGTAGCCAAGCAAGTAGTCAGCGCAGTCAATCCCACTCTTGGGGTTAGCATCAAGAAATTCCCCATTTTTGTTAACCAGACTTATCAGTTTTAACAATAAAATATTCATTAATAGCAGCTAGCATTACGAAAAAATACATAATTATTGATACAGGCTCGACAAGATATGTCAGTAGTATTATGATGAGTCTATTAACTTGATGTTTGGCAAATCGAAGCGGGGGCGAAAACCCTATAGGTTCTGCCAAAATCCCCAGAACCTTGACAAGTGAATAATTTCAGCGTTTCGAGAATTGGAGCAGATGCAAATTATTTGCAATAAGGTGGGCTGAAATTGATTAAATTTTTCGATCTGCCAAAATGCTTCTCAGGATGCTTGCTGTGGTTAGGTTTCAATACCCAGCT # Right flank : CAATACATTGGCTAAACAAGAAATGACTAACGCTCAAGGAAAAGAAAAATAAATGTAGGTTGGGTTGAACGGAGTGAAACCCAACAATACCAAAGTTTTCGCGTTGGGTTTCGTTCCTCAACCCAACCTACAGCTACATTGGTAAAAGCCTTGAAAAATAAGCGGTTTGAGATTTTTATTTGGTGAGAGTGATTAAAGAGGATTAAAAAGAGCGATCGCAATTACGATAAATATTATTTTTGATAGCATTTTCCGACATAGTAACATATACCCGTAGGGGCATGGCACTGCCATGCCCTCTACAATATATTGATATGTCGCTGTTGCGTGTTGTGACAAAGCATGTAAATCTATGTTTAGTAATATTACTGAAAATATCAAGGCTTTACTAAAGCGTTACATCAGAAAAATTGGGTAGTAACTGGGTAGTAATTGGGTAGTTTTACCCTATATAACCACCGGAGATTGATCCATAATAATTGATATAAATCATCGCTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 1 447-116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000113.1 Calothrix anomala FACHB-343 contig113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 446 37 89.2 38 .......TGC.........C................. ACAGCAGATGCGGCGGTAGCAGCAACGGCAATGACCGT 371 37 100.0 37 ..................................... CAGCAAACCGTTTTGGAAAAATTGCTAGATCCAAAAT 297 37 100.0 37 ..................................... CTAGAGAAAAAGGTGCTAAAAACTTTTTCTATATAGG 223 37 100.0 34 ..................................... ATAAAACGCTACTGCTGGAAAATAGCGAAGTTAA 152 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.8 37 CTTGAAACTTAGCGAATCCTGGCAACGGGATTGAAAC # Left flank : TTTTTTACTATTGATGAGGTGGAATTTTTACAGCTTTATTCTTTGGTGGTACGTGCTTTGCGGTTATGTGACCAAAGGTCTGTACAATTTTAGGTGAGGGGCATTGGGCATTGGGCATTGGGCATTGGGCATTAGGCATTGGGCATGGGGCATTGGGCATTGGGCATTGGGCATGGCGGTGCCAATGCCCCTACAATCAACTATTATCTGTACCTCACTAACTTGCAATTCGCTGTATTTTCTCCAAAGGTCTGGACATTGTTGGAGAATACCCGTATGATGATGCTATTAAATTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTTGACAAGTTAATAGTTACAGCGTTTGAAGAATTGCGACAAATAGGAATTTGTTGCAATAAGCGAGGCTGAAATGAGGTCATTTTTGAGGTCTGCCAAATTTGCTTGTGGAATCCTTGCTCTGTAAGGGTTTCAGGCGGCGGA # Right flank : CTTTTCAAACCATCTAGACCTCCGCAAGGGTACTCCCGCCACACCGAAGGTTGGCGGTGAGGGGAATTGCGGGACAATTGGAGGGGTTCGATACCCCTTCAATTGTCAGGATTATT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 6695-6943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000114.1 Calothrix anomala FACHB-343 contig114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 6695 36 100.0 35 .................................... TTAAGGTTGGGGGTATAGAACTTAAAAGCATTAAG 6766 36 100.0 34 .................................... AATGGATATACAAAACCCCTGGCTCGATTAATTG 6836 36 100.0 36 .................................... TTAGAACGATCTGCACTGTTTTATTAGGAAGCAATG 6908 36 88.9 0 ............G.....T.A..............A | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 97.2 35 GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAG # Left flank : GTAAGACGGTTTGGTTGTTTATTTTTGGGAGAAAGTGACCAGTTGATTAAAACGATTAAACTTGTTTCGGAAGATTATCTCAAGGGGGTGAGACAGTGGGCAATTAGGGATAATCGAGGCAGGTTAACCTTACCCTATTGGGTTGACCATGTGGGGTCAAGAAATACCCGATTTTTAAGGTATCGGATTGAGGAAATGCCAAGCTCACCACCTCCTGATTTAGCATGGACGATGATTCAATCTCCAATTTGACAAGTATCTCTTATGGGAAAGGAAATTTAGGGTAAAAGAATTGGGGGAAGGTTTACACGGTAAGGGACATGGTAATTGAAGCAAGGAAAAAGGTGCTTGCTATTTTTGGGAAAGTTTATCGGTACTGGGTTTGAGGGGCTGAAAGTCAGGGAAGGTTTGCTAAGTTTTACGTTTTTGGTTTCTCGATTTGGAAGGTACTTGTAAGATTGTAAATGAACCTTCCTCAGTTAAGGGTTTTTACCTTTGCT # Right flank : AAGCGATCGCCCACTGGTTTAAGATGGAGTGCGATCGCTACTTAGTGCAAATCAACCAGAGAGAATTTCTATGCATACAAGAAAGAGAGGTGAATTGAATCACCTCTCCAAATGATGGGATAAATGCTTTGTGTGTTACGCCGCGTCGGCTACCAGTAAGCCATTAACAGCGATGATGATTATTTGCGCTGCTAAAGGAGTATCGCAACATGGTCTATCATCGCTATTACAGGGTTGTGCTACCCATTTCCCTTCTAGATTTTGGTAGAAAGTGCCAAGTAGTTGAGAAGCATTCCAGACTCGATACAGTTCACCCAACTCATCTGGTACTGAGTCAATTTCAATTTCTGGTGCTACTGGATCGGCAAGTTGGTCAATATATTCATCAAACTCGGTTTTAGCCAAGGCTTGGTTATCAAATTCATCTTGTACAATCATCATGAGTGACCTCATTAACGGGGTTGAACAAAAGGCGATCGCATTTCTCTTGGCGGAGGGCG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5845-6175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000103.1 Calothrix anomala FACHB-343 contig103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5845 37 100.0 36 ..................................... ACATTGTTATATCTTTCTTCAACCTTGTCAGCAGCT 5918 37 100.0 36 ..................................... CAACAATTACCTTTATTCATTTTGTAGCGAACTAAA 5991 37 100.0 37 ..................................... TTCAGGTTCAAAACCCGCCCAAACGCCACCGACCGGG 6065 37 100.0 37 ..................................... TTGGAACGAAACCCAGCAGTATTTTGTGTGGCAAGAA 6139 37 94.6 0 .........................G..........A | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.9 37 GTTTCAACAACCATTCCGGCTAGGGATGGGTTGAAAG # Left flank : CCAATCCGAACCTTGAAAATATAATATTGTCATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGATAAATCTGGGTTAGTTTGGCAGTTGTCAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCATTCCTGATGCTGCCATCTGTAAAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAATCAGGCTTTTAGCTGTAGCCGTTTTTATAACGGCGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCAGGGGAACCGTCTCAAATATTTTTTTGGCATGTCGAAGCGGGGGCAAAATCCCTGGAGTCCTGCCAAAATCTTAAAGTCCTTGTCATGTCTTAACTTCAGAAACTACTATGTCAGTTGATTTAGTTTTTTGATATGAAATAAAGAAAGCTTTTTCAGAGATCTGCCAAATTTATGCCAAATTTGTAGCTGGAAAGCTTTATTTACAAGGAGTCTAGGCGGCAG # Right flank : AAATCTTCATTAGCAAGCTTTTGATTTGGTTGCTGCAACCATTTGTGCCAGAATAGTTCTGAAAAAATAAGCATATAAAGACTATTTACTCGCTCTAACCAGGCTGTAAAGTCTTGAAAAGGTTATAAATTACAGCAGTTTTCACCTATTTGAACCACATCTGTCGTAGTAGGGGCACGGCACCAGTAAAATTATTGTATGTGCCAAAAGATTGTCTATGCCGTGCCCCTACAGTGTGGTCTATTTACCTGAAAATAGCTGTAATTATTGGGAGGGTTGAAAGGAGTGCTGCGATCGAACAAAATCAAATTCAGTGGTTAGTATAATAATCAACGGTTTAGCGACATTAATCTGTTAACAGTTGATTAAAGTGAACCGATGACACTAATTAGTTAAAAGCGACATTAATTTGTTAATAACGACAAATAATGTGTTATTCGACAACACAAATGGAGAATAGGAGACTCGAACCCCTGACCTCTGCGGTGCGATCGCAGCAC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATTCCGGCTAGGGATGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 44232-44627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000015.1 Calothrix anomala FACHB-343 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 44232 36 100.0 39 .................................... ACATAACAACGGGCTACACCAGCAAACCAATCTGATAGA 44307 36 100.0 35 .................................... GTTGAACCCCAGGTTTGCGCGATAGCTGTTAGTCC 44378 36 100.0 35 .................................... TTTCTTATCCTTGGTTCCCTGTGTGCAAGGCTTAA 44449 36 100.0 36 .................................... ATTTCTTTTTCCATCCTTGAGGGAGGCTTGGGATAT 44521 36 97.2 35 .........C.......................... GTAAGGTTCCCTACCTCGCCCAAGGTTGCTATCCA 44592 36 91.7 0 ..........................T....AG... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 36 GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Left flank : GTAAGACGGTTTGGTTGTTTATTTTTGGGAGAAAGTGACCAGTTGATTAAAACGATCAAACTTGTCTCAGAAGATTATCTACAGGGGGTGAGACAGTGGGTGATTAGGGATAATCGAGGAAGGTTAACCTTACCTTATTGGGTTGACCATGTGGGGTCAAGAAATACTCGATTTTTGAGGTATCGGATTAAGGAAATGCCAAGCTCACCACCTCCTGATTTGGCGTGGACGATGATTCAATCTCCAATTTGACAAGTATCTCTGATGGGAAAGGGAATTTAGGGTAAAAGAATAGTGGAAAGGTTTACGCGGTAAGGGATATGGTAATTGAGGCAAGGAACAAGGTGCTTGCCATTTTTGGGAAAGTTTATCGGCACTTGGTTTGAGGGGCTGAAAGTAAGGGAAACTTTAGTAAGTTTTGTGTTTTTGGTTTCTCGATCTGAAAGGTACTTGTAAGATAGTAAATGAGCCTTGCTCAGTTAAGGGTTTTCACCTTTGCT # Right flank : ATGAGATACAGGTGAATTAAGGTTGTGTTTACCACAAATTCCTCTTCAACAACTACTTTGACTAGAAATTTTTCCCATTGCTCAATTTGATGAAGCAGTTCTAACCTGCGATAGCTACTTAGTGCAAATGAAGCAGAGAGAATTTCTATGCATACAAGAAAGAGAGGTAAATTGAATCACCTCTCCAAGCGATGGGATAGGTTCTTGTGTTTTATGCTACGTCGGCTACAAGTAAGCCATTAACAGCGATGATGATTATTTGTGCTGCCAAAGGAGTGTCACAGCATTGCCTGTCATCCCTATTACAGGGTTGTGCTACCCATTTCCCCTAGAGATTTTGTTAGAAAGTGCCAAGTAGTTGAGAACCATTCCAGACTTGATACAGTTCACCCAAGTTATCTGGTACTGAGTAAATTTCAATTTCTGGTAATACTGGGTCGGCAAGTTGGTCAATTATTCCTCAAACTCTGATTCAGCTAAGGTTGAGTGTTACAAAAATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 113190-111474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000019.1 Calothrix anomala FACHB-343 contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 113189 37 100.0 35 ..................................... CATTAACAATTACTGGGGGATTATAGGGGCGTACA 113117 37 100.0 36 ..................................... GAGTGCCAGTTACTTCTGGATACTTGCGGTGTTCAG 113044 37 100.0 35 ..................................... TAGATTTTCCTCAATATCTTCTACTACCCTGCGGA 112972 37 100.0 33 ..................................... AAAATAATTCTGCGATTAAATCAGCTTCTAAAT 112902 37 100.0 35 ..................................... ATTATTCTTTAACTTGAAGAGATAATGATGTTTTT 112830 37 100.0 38 ..................................... ACGAAAATTGAGCATTGATGACGCGTTCCTTGAAAAGA 112755 37 100.0 35 ..................................... GGATCGCACATTACGCCTTCCGGTCGCAACCCCGT 112683 37 100.0 41 ..................................... AGCCGGCATCAAAGCCAAGGAATTTGCTGATGCACTCAAAG 112605 37 100.0 34 ..................................... AAGGAATTCCGCCAGGGGGAATTAATAGCCTCAG 112534 37 100.0 37 ..................................... ATCTGCACTGCGCGGTTAGTATCGGCATCTGCACGGA 112460 37 100.0 42 ..................................... CGAATTACCAACCAAAGCTTTGGTGAATATGGACAAGAAGCA 112381 37 100.0 36 ..................................... TATTTCCCGGTTCAGGGAAGGTGACTGGGTGCGAGT 112308 37 100.0 38 ..................................... CTGTCGCCCATTGGGCACATGCCAATCACGCCACTGGG 112233 37 100.0 34 ..................................... AAATCGAAACCAAAAACCAACCAGAAAGATGTAA 112162 37 100.0 41 ..................................... TCAACTGCGGAACACACCACGACCGAGACATTAACGCAGCA 112084 37 100.0 34 ..................................... AAGCAATCTTAAATGATTTTGGCGACCCTACGGA 112013 37 100.0 37 ..................................... AAAGCGGAATCAGAAACGATCGCATTATTAACCTGGA 111939 37 100.0 34 ..................................... TACTTGTGTGGATGTTTTGGGTGTATCTACCCTT 111868 37 100.0 34 ..................................... ATGCTCCTGGTTGGGAAACTTGGACACCTGCACA 111797 37 100.0 36 ..................................... GTCAGCTAAACTTGGCAAAGCGAACGACCCAGAAAT 111724 37 100.0 36 ..................................... GTGTATGCAACTTTTTGGCTAAACTGGCATCTGAAC 111651 37 100.0 33 ..................................... ATTAATAAGCTGATGTAACCCAAGCTGTTTAGA 111581 37 100.0 35 ..................................... ACGATACCAAAAGAGCCAAGGTGAAGTAGCCCATA 111509 36 94.6 0 ..............-.............A........ | ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 99.8 36 GTTGAAATTTCACTTAATCCCTATGAGGGATTGAAAC # Left flank : GCAAAGTTAACTGGCTCCCATGCTCTGCGTGGGAGCGATGATCCTGAGGCTCTGCCTCAATTTATTCAGGAGACGAGGCGGAGCCTCGCAATACGCATTTCCAGCCGGAGGCTGGAAACGAGATAGAGAAAAGTTTTGAGCTTAAGTTGACACGTATGGGTATTGCCATGCCCTCTAGAATATATCGATGTGCCGCAAACACTGTTTAAAATAAAGTCAAGCCTACAGAAGTACAGTTAAACCTTGCCCAATCCGACAATTTTCTAGGCAGAATGCGCGAAGGGGTAGGTGTAAAATTTGAAGTTACCAGAAAAATCGGTGAAACTCTTTCTCTGTAAGTCTTTTAACTGTTAATTGTTGTCCAGGCACCCGCGTGCCTTATACAGACTGCCTTTCAGCTTTTTTAGCTTTGCTTTTTTTCTATCGCGTATGTTATGATTACGCCATCCGCGCAACCGAACCTTGAAAACTGCATATCAGTTAACTTTGGAGCTTCCGCA # Right flank : AGAATTCATTGCAACCGATAAAAATTAGGCTTGTCAACAGTTAATAACCAAAGTTAAATACTATGGACTATTGACTATGGACTGTTGACTAAAATCTATGACCAATGAAATCTTTCATCGACTTGCGCCTTTTATCCAAGAATATATCTATAATCACAACTGGACTGAATTACGCCCAGCACAAATAGCCGCTTGTCAAGTCATATTTGATACCGATGCTCATTTACTAGTTGCAGCCGCAACAGCCGCAGGAAAAACAGAAGCCGCATTTTTACCTGTGGTGACTCGATTGTATGAAAACCCTGCTAATACCATAGGTGCGCTATATATTGGCCCCATTAAAGCTTTAATTAACGATCAATTTGAACGCCTCAATGGTTTACTCAAAGCCGCAGATATTCCAGTATGGCATTGGCACGGTGATGTATCTCAAAATCAGAAAAATAAGCTATTAAAAAATCCCAAAGGTGTTTTGCAAATTACGCCAGAATCTTTAGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 108811-109491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000018.1 Calothrix anomala FACHB-343 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 108811 37 100.0 34 ..................................... GATTTTTAGATTTACAGCTAATAAAATGCTTACC 108882 37 100.0 34 ..................................... AATTGACTTGGATTCGCCAGAGTTTGAGGATGTT 108953 37 100.0 35 ..................................... TTCAAATTCTCGGTACTTTAGCCAGTTGGCGTATT 109025 37 100.0 36 ..................................... AAGCTAGCTTACGACACAGGCGTCGCCTCGGCTGAA 109098 37 100.0 34 ..................................... CTTTCCCGTGATGCCCACATCGCCCTTGCTCCCA 109169 37 100.0 34 ..................................... TCAGTACAAGACTTATTATCGATAATTTTAGCCA 109240 37 100.0 35 ..................................... CCCCAATTTCCCGCGCTTTCTCTATGTCGTTTTGC 109312 37 100.0 35 ..................................... AAACATCAGGTTGGTATGCACCCAATCCTTGATAT 109384 37 100.0 34 ..................................... GATGAAGTGCAAGAGATTGGCGCATTCAAAACAC 109455 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : TTTCGTACTTCAGGCAAGGGGACGGCAGTTGCTTCAAGCCGGGAAACCCGTCCAACGCACTGCCTCATGAAAGCTGCTAGAAGGTGTTTACGCCTGGGTCAGGTTTTGGTAAAATTAAGTCTAACAGGAACGGTAATCAACCTGTATAAAAACCTAACTGCCTAACGGCAATCTGTACCTTGACAATTGAAGATATGGGGTTCTATTCCATAGTTCTAGTTCCTGCCCAGGAATAGGTAAAATCTTCATGGGGGCTAGACGAAACAGAATTTGAACAAACAAATTCTTTGGAGTAATCCAACTACCGAGGGGCACTCGGAAAGTTAACGCTTGAGGAGAGAACCACCTCTAGTTTAGATACCGCAAGGGGTCTAATTTAAGTGGACTCGTTGAATCAAGAATCCCTGTGGCTTTAGCCCAGGGAGTGTCAAGTTATTATGGCGCTATCCGCGCTCCAGAACCTTGAAAACTGCATATAGATTAACTTTAAAGCTTCCGCA # Right flank : CGAATGTTCATTTTGGTATCCGATGGCAGGATATGGTTGAAATTTCATTTACTCCATGAGCGCAGATAAGCCATAATCCTACCGTTTAAATAAAAAAAGTATGCTGTTGCACCACCCTTATTTAAAAGATATTTTGCCATTTGATGAACTTCTTTTTGTTGTTGTACCTTGTTATCGGCTAAGTAAATACCTAATAAAGCCTGATTAATTATTCGATGAAAATTGGTATCTGGTAACTTAGCAGCACTTTTATTAGCATTTTGGAAAAAAGTTAAAAATCTTTGAGACATTTGATAATGATTTTTGTAAAAATCACAAAAATTCAAATCCCCATTGATATGGTCTTCATCTTGGTCAATTAAATAATCAAGTAAAATATGCAATCCCTGTAACCAGGGGAAGTAACTATTTTTAACAAGCTGGCTCATATCCTCAGAAAAATTTTTATCAAAGCCATAAGAAATTAAACAAAAAATACCTAAAGTTGACCCAGTAGCAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 109966-111813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000022.1 Calothrix anomala FACHB-343 contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 109966 37 100.0 35 ..................................... AAAAATATGATGCTTCCGGGCGATCGCAAAATGGT 110038 37 100.0 38 ..................................... AAAATTCAACGTGTAAATTCTCAATGTGTTACTGTAAT 110113 37 100.0 34 ..................................... TTAGATATGGGCATTTCCCCTCAGATGCTAAAAA 110184 37 100.0 38 ..................................... TAAAGCTGCTGGTGTTCCCGTTCCTCCTGGCATGTCTG 110259 37 100.0 36 ..................................... CCTGATATTAATCCTATTGAGCCTAAAACTTTTACT 110332 37 100.0 35 ..................................... AATGAAGCCGGAACATTTTAGTTCAGAGGATTTAG 110404 37 100.0 32 ..................................... AGGATAAAGTAGAATTATTAATAGAAGTTAAG 110473 37 100.0 40 ..................................... TGCACCGATTAGCGTATGGCACGAGTTACAAGCCAGAAAA 110550 37 100.0 37 ..................................... ATTTAATGGCAATCCCATTTTTTTGAAAGATTCGTAG 110624 37 100.0 32 ..................................... AACCAAGACACAATCGGACTTTGGGAAACTAG 110693 37 100.0 35 ..................................... TGCGCAGATTTCTTTAGCTATTGCGGGGGCTTTAG 110765 37 100.0 33 ..................................... TCAAGACACCCACTGATAAGCTAGGTTTAGCAA 110835 37 100.0 37 ..................................... ATTTTTAACCATTTCTGACTTAACTGATTGTCCTGAA 110909 37 100.0 35 ..................................... CACTCCATAAGCTATTAGCTTTATCAAGCCCCTTC 110981 37 100.0 36 ..................................... ATATTCATAACTAAAGATGGAGATATTAAATATCAA 111054 37 100.0 34 ..................................... GCGTACCATCCGTAATGCCGGGTATTTATTAGAA 111125 37 100.0 35 ..................................... ACTTTGGTAGCCGCAACCACGGGACAGCCCACAAA 111197 37 100.0 36 ..................................... GATTTCCAATGCTTAGGGGGATATAGCTTGAATATT 111270 37 100.0 37 ..................................... AAAAATGCCCATACCCATAAGAACAAGGTATAAAGGG 111344 37 100.0 37 ..................................... GAATAAACGCGATCGTTGTCGATGTACTGAACATAAT 111418 37 100.0 35 ..................................... GAAGACTCAAAATACTGCCATAAATCATTCACAAT 111490 37 100.0 34 ..................................... AGAGACAATCTGAGACTATCGGTGGTTGGTTGTT 111561 37 100.0 34 ..................................... GCAGTAAATATATTTTGCTATCTGCCACCTTTTT 111632 37 100.0 36 ..................................... AAAGAAGCGCTAACAGAACTAAAATCTGTTGTAGTA 111705 37 100.0 34 ..................................... AGAATTGAGACAAGTAAGTGAGCCGGTGATCACA 111776 37 83.8 0 .....C........A.T...TA..........T.... | T [111787] ========== ====== ====== ====== ===================================== ======================================== ================== 26 37 99.4 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : CGGTGAGTAAAGCACAATCGGAAGTTATGCCCCAGGAGTTTGCTAAATTGACAGTACCAGTACTGTTAGTTGCGGGGGAGTATGACAAGATTATTCCCGCAAAAATGGGACGACAAGCTGCGGCGATGAGTGATAAGGTTGAGTTTGCGATGATTCCCGATACAGCGCATTTCCCAATGTTAGAAGATGCTTCTACTTACCTGCGAATGGTGGGGGAGTTTTTGCAAATTCCCGTAGCAGTTGATTGAGGAAATGACGATTTTCTCCGCAGAATGCGCGGATGGGTAGGTGTGGAAAATAGGATTTTGGCACACATAGCTGAAACTCCTTATCTGTAAGACTTTCACAGGTTAATTACTTATCTATCGCCCGCGCACCTTACACAGACTGGCTTTCAGCGATTTTGGGTTTGCTTGTTTTCTATTGCTTGTGTTATGATTTACTCATCCGCGCACCAGAACCTTGAAAACCTCATATTGCTTAACTTTCAGGCTTCCGCA # Right flank : CCAAGGTTAGAAAATCCAAATTGTTTTTCAGCATAGTAATGGCTTTAGCCCTTACTACCAAGAAAAAGTTGAGTTTTTTGTGACATTTTCGGAAGTCTTATTTATTAATTTCTCAATCCTTTCTCTTTTAAAACCTCATCTAACCAAGCTAAATTTTCTGGTGAAATCCCAGGTACAGGTTCTTGACTATAATCAATCACTAAATCATAATTACCTTCATCGTAGAGTTCACTAATTAAGGTTTGAATATCTACTAAAGGTTCTGTATCACCTTCACGTAAAGGTAACAGAAAAGAAGGTATAGAATCTGGTAAATTAAATGGATATAAATCGGCTTTAGGACGTTTGGTGGCGCGACTTACCAAGATTCTATAGTCAGTTTGCAAATTATTTTGTAGTTGCTGTATTGGCTTTCCATCTCGCAGCAAATCAATTTCTACTAAATTGGTATAACTTCCTAAAACTTGTAACCGCTTTTTTGTATATGCATTTCGTCCTTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 199386-198132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000003.1 Calothrix anomala FACHB-343 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 199385 37 100.0 35 ..................................... ATTTCCAGGGGCGAATAACTCGAACCCGCAAGAAG 199313 37 100.0 35 ..................................... TTTTCTTGTGCTTCTGAATCTCAGGAAATGCTAAT 199241 37 100.0 34 ..................................... AAAGACCTTAACAACTACACAATTAGGGATGCGC 199170 37 100.0 36 ..................................... TTGCACTGGTTTGACAATCATTTTTAATTCGTTCAG 199097 37 100.0 36 ..................................... ATTTAGGATTCTCCTACTGGTAATAGCCGCACTAAT 199024 37 100.0 34 ..................................... TTGAAAAGCATATTCAGCAGTTCTCAAGCCTGCG 198953 37 100.0 34 ..................................... GATTTTGCAAGAAATATTGATACTGCTGCTAAAC 198882 37 100.0 34 ..................................... TATCTACTACAACCGGAGTGTGGGCACTAAGCAC 198811 37 100.0 34 ..................................... AATTATATCTTTAGTCTTATATACCGAGTATTGG 198740 37 100.0 33 ..................................... GAGAATATTGTTGTTGATAATAATGTAGATTTT 198670 37 100.0 33 ..................................... GCGAGTTATAAAAACTTAGTTGTTACACCCTCT 198600 37 100.0 36 ..................................... AGAAGATGTACGAGACGGAATTAATCAAAAGCTTGA 198527 37 100.0 35 ..................................... ACATTGAGAAGCCTAGCAATATAGGACTAGATAAG 198455 37 100.0 35 ..................................... GTGCTTTAATCCACCCCATAGGCGATCGCCCTCTT 198383 37 100.0 34 ..................................... AGAGAAACCTCTAAACACTCTCAATGATGGTTTA 198312 37 100.0 34 ..................................... TCCTAAAATTAAGTTTCGCAGCTTCTAAATCGAT 198241 37 100.0 36 ..................................... TAGTTTGTACTTCAGTGCAGTAAGTGTATTCAAATA 198168 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 100.0 35 GTTGAAATTTCAAATAATCCCTATGAGGGATTGAAAC # Left flank : GCTTTTGGAGAAATTTTAGTTTAAAGGACATGGTACTATCTTGTCCTATCTCTAAGTCTAATGTTTTGAGTTTGTAATTTTTTAAACATCAACTTAAACATTGGTTCACCCATTGCAGCTGGTTTGCTACAATCAGACCAATGTGGCTGAATGCACCCGCTATTAAAGCATCTTGCTTACATCCTGGCAAGCTATCTCTGTTTTGGTAGGGAGTAGGGGGCAGGAAGTCTGGAAGTCTCCCATGTGTCTACAGCCAAAGTTTTTTTGGCAGAATGCGCGAAGGGGTAGGTGTAAAACAAGAACCTTGCAGAAAAATTGCTGAAACTCTTTATCTGTCAGATTTTTAACGTTTAATTACTATTGATGCACTCGCGCGCCTTATGCAGAGAGACTTTCAGTCATTTTGGGTTTGCTAGTTCTCTATTTTGCATGTTATGATTACTCCATCCGCGCTGCCGAACCTTGAAAACTCCATATAACTTGACTTTGAAGCTTCCGCA # Right flank : AAATTGGTATTGAAACACCTTTCATCTAATTCCTGAGACACTTCATCAATTGTTGAAATTTCAAAGAAAGTGTATTTCAGGTAAATGAGGTACGCGCTTCGGGGCATGGCAGTGCCAGTGCCCCTACAATCAACGATTATCTGTACCTCACCAATTTGCAATCTGCTGTATATAGGAATAGGAATCCGATTTGATTTGGTGAAAAAATAACCGTATTTGTAGTTAGGGCATTGCCCACCGAAACCCCGATATGGTGGGCAATACATTCCCAATGCCCAATGCCCAATGCCCAATGCCCAATGCCCATTTTCAAAACATGCTAAGTTGCAAAATTAGCGATCGCACTAGCTAATGAGGTAGGTTTTAAAATTAATTCGGCAAAAGCTGCATTCAAATGTCCTAAATCGGGATTTGCTGTTAAACTCAGCCAAGTTTTGATACTTCCTGGTAAATCAGAATTTAGCCGTAGAGGTATTTCTGATGTAGACAAGGATTGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 77950-76112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQG010000042.1 Calothrix anomala FACHB-343 contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 77949 37 100.0 38 ..................................... AATCAGCAAAAGGTAATGGCTCTTGTCCTTCTGGCATT 77874 37 100.0 36 ..................................... TCAATGTACCCTTCATCTCCTTCGACTATGCGGGCG 77801 37 100.0 36 ..................................... CAATCTTCCAATAATCCAGATACATCACCAACAGCA 77728 37 100.0 34 ..................................... AACGGCACAAATGGTAAAGTTGTAACCCCAGAAT 77657 37 100.0 33 ..................................... CCCAAGTTGTATATGCAGAACAGAACATAAATT 77587 37 100.0 33 ..................................... TGAAACTTCAATATTAAACCACCAATCCTTAAG 77517 37 100.0 35 ..................................... TTAAATAGATATAATCTATAGTACTATATATAATA 77445 37 100.0 33 ..................................... ATTGGTGAGAGGATATCTCTAAATCTCTGACCG 77375 37 100.0 33 ..................................... TTCAACTCGAAATGCCCCAAAAATTTTGAACCC 77305 37 100.0 36 ..................................... CGAATTACCAACCAAAGCTTTGGTGAATATGGACAA 77232 37 100.0 34 ..................................... TTGCCTGATACTTTTTCTACTATTCCTGAGTTGC 77161 37 100.0 38 ..................................... TGCATTCCTGACAACCATCCAGATTTCAAAATTAACGA 77086 37 100.0 34 ..................................... CGTGCCAGCTTGTGAGCATGTCCACCATCTGCTA 77015 37 100.0 34 ..................................... ACAGAAACCGGAGGACTGCTGCATAAATCTTCTG 76944 37 100.0 35 ..................................... ATACCTATTGGCTACCTGACAGCAAAAGAAGACAA 76872 37 100.0 35 ..................................... AATTTATGACCCTAAAATTGATGCTCCGAGATTGC 76800 37 100.0 36 ..................................... TGAAAGCATCTTCTTTATTTAAGGCGTAGTAGTCAG 76727 37 100.0 39 ..................................... TAAAGTACTTTACATCAAGGCTACTTTTAGGGCATCTAC 76651 37 100.0 37 ..................................... AACTCACTGTAAGAATAAGTAACACTTGTGTTTGCAG 76577 37 100.0 35 ..................................... GAGAGATAAATCTCGCCGGGGCTATTAACAACAGT 76505 37 100.0 34 ..................................... TAAAAGCCATGATAGACAATCCTTGTGATGTTAG 76434 37 100.0 36 ..................................... GGATATAAAGCAAATATCGCTGGTGTTCCGGTGGTA 76361 37 100.0 35 ..................................... ATAAAGAAAGAAAAGCTACTTATCAAAGTAAGTTT 76289 37 100.0 33 ..................................... CAGGTTGAGCCATCGGATTTTTGGTACAGATTT 76219 37 100.0 34 ..................................... TTGCCTTGTCCGAGCTTGGCGCTCAATCAGATAA 76148 37 94.6 0 ..................T..G............... | ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 99.8 35 CTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AGATTAGATGCTTTAATTGACTCATCAGTAAAGAATTTAATTATTCTCTAATGATATTAAAATTACCGTAATTTGAATAACTGTATAATTAGCCTACTGATTAGCCACAAACGTTAAAGCTGTGGCTTTTGCAGCTTAAGCGGAAGCTTATACTGCTTTGACGCAAATTGCTATGTTATAATAATTACCAAGTGAATCATTATTTATTAGAATTCCTCTTGCCCACTCCGAATTGAGATGAACGTCAGCGAATTCAACAGTTTTCTGGGAAGAATGCGCGGATGGGTAGGTGTGGAAAATAGGGTTTCTCTAAAAATGGCTGAAAGTATTTCTCTGTAATGCTTTCAAATATTTTTCATGTTAAATCGCCCGCGCTCTTTATGCAGCAATACTTTCAGCGATTTTGCCTTTGCTTTTTTACTATTGCTTATGCTAGAATTGAACCGTCCGCGCAACAGAACCTTGAAAACCTCATATTCACTAGCTTTCAGGCTTCCGCT # Right flank : TTTAAGACTCAAGACTAACAGGGAAAGTCACTGTAAAAGCTAGTAGGTTGGGTTGAACGAAGTGAAACCCAACAAACCCCTGGAAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCAGCTTAATGTTTTTCGCGCTAACTGAACTGTATTGAGTCCTGCCCTATTAGGGATTGAAACTTCACGACTCAAGACTAACAGGAAAAGTCACTATAAAAGTAGTACCTTTACCAAGGCTGCTTTCCACTTGTATTTGACCTTGGTGATGTTCGACAATGGCTTGAGCGATCGCTAATCCTAATCCTGAACCTGTAGAAATGTCGCAAGCTGTATTTTCGGTGATGTGGGTACGTGCTGGATCTACGCGATAAAAGCGATCGAATAATCTTGGTAGCGCTTCTGAGGGAATACCAATCCCTGTATCGCTGACTTTAACTTGTAATTGGGCACTACTGTAACGCAATCCCGAAACTCGATGGATTCCTTCGAGACGGGCTAATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //