Array 1 6371-5375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKRU010000015.1 Lactiplantibacillus pentosus strain L33 scaffold15_size90719, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6370 36 100.0 30 .................................... GATCTAAGTCATGTCGCGGGGTGGTTTTTC 6304 36 100.0 30 .................................... ATTTACAATTGTAATCAGGGTACGCGCCGT 6238 36 100.0 30 .................................... TAATTATTTGCAAAGTGGCTGGTGTAGACC 6172 36 100.0 30 .................................... ACGGCTTTAAGCTTGTGCTCGTGGACGTAT 6106 36 100.0 30 .................................... ACTTATGTACCAGCGATTACAGCCGTTAAT 6040 36 100.0 30 .................................... TTGACGGTAGTAAAAACACCGGTACTTGCA 5974 36 100.0 30 .................................... CGGTGTTCGTTAACGATGGGCGCCGCGTTC 5908 36 100.0 30 .................................... TCAGTGCATGAAAGCACCGTCATATTTTCA 5842 36 100.0 30 .................................... TGTAGGTACCAATCATCCCATTGATTTTGT 5776 36 100.0 30 .................................... CTTTCATTTCGAAATATTTCGTTTTCAGGT 5710 36 94.4 30 ...........C.......................T GTTGAAATGCAGATTGCAACAAGCGTTAAA 5644 36 100.0 7 .................................... TTTGATG Deletion [5602] 5601 33 77.8 30 --..GT....-..T....C.A............... CCTTGCTGACGGTAAACAGCGCACCAGATA T [5583] 5537 36 100.0 30 .................................... TTTACCTGCCGTATACGCCTGATACTCCAT 5471 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 5410 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 96.2 28 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGCAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : AACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAAA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 76258-75638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKRU010000002.1 Lactiplantibacillus pentosus strain L33 scaffold2_size236308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 76257 28 100.0 33 ............................ TGAAAAAGTGGAAACAGTTCAAAAGCAAGTAAG 76196 28 100.0 33 ............................ CTAGTCACTGCACGTGCACTTATGATGTGGACG 76135 28 100.0 33 ............................ TATATACTTGCTTGCGATACACGTGTGTAAATA 76074 28 100.0 33 ............................ TGGTTTCAGCCAATTTAAACGCCATTTTTGACT 76013 28 100.0 33 ............................ TCAACAACATGTGGTCACTATCGATCAGACTAC 75952 28 100.0 33 ............................ TGTGATGCTGCAAGGCTGGCGGTTCAAGTTCCA 75891 28 100.0 33 ............................ TAAGGAGGTATTCCAGATGTACGCAGTTAAGAC 75830 28 92.9 137 ..T..........G.............. TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAAAAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 75665 28 82.1 0 ..A.........C..A..........TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 9 28 97.2 46 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : ATTATTTGCACATGGTTGATTAAAAGTAGCCTTTTGCCGGTAAACTTCGTGCGTATTTAGAATTCATATTTTATTAAGCGTTTACAATTTATTGTGAACATTGCTGCCAATCCTGAATTATACCGACAAAAACTCGTCGGCTCTCATCCGTACATTTTTGTCAGAACCCTAAACTGCTTGTGAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTTGATGGATTTTCGATAAATTATGACGACTAGTTTGTATCAAGACAGTCTGATATGTCCAGTTTTGAAGTTTCCCAATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGAGACTTAGCCAATTTTGAATTGTTGATATACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGAGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACGTTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGTA # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79569-78877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKRU010000002.1 Lactiplantibacillus pentosus strain L33 scaffold2_size236308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 79568 28 100.0 33 ............................ TTAGTGGCGTTGTTGAGCGATTGCGTTAGTTGA 79507 28 100.0 33 ............................ CGGATTGCCTTTCATAGCGAATTCTTGCGCGTC 79446 28 100.0 33 ............................ CTACTACAGCCGTATTGCTGCAGACCAAGAGAA 79385 28 100.0 33 ............................ TGCCGACCACTTGACGTCGACGGAATGGTGCCG 79324 28 100.0 33 ............................ TGATAGTCCGGAGACGGGCAACAAAGAAATGGT 79263 28 96.4 33 .......................A.... CATTGCACATGTGGCCAAAACGTCGACGCCGTA 79202 28 85.7 35 ...............A..A..A...C.. TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 79139 28 92.9 34 ...........A...A............ TTAACACGCCGGTAGTCCCGTTTTTGGGGGATTG 79077 28 89.3 33 ......T........A.....C...... CATGACTGCGCACTATACTGAGTCAGCCCGACT 79016 28 78.6 33 ..T.....T......A.A..A.....T. GAGGTGCACTCTCGTGAGAAGCGTAGACGCTAG 78955 28 85.7 23 ......TT...........A...C.... TCGCTGAATCGATATCCACCATT Deletion [78905] 78904 27 78.6 0 T.A............A......C-...T | G [78879] ========== ====== ====== ====== ============================ =================================== ================== 12 28 92.3 32 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGATCAAACATTCACGCCTATTAAACGTCGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTTGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCATCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //