Array 1 19383-21690 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLQI01000007.1 Pseudomonas aeruginosa strain WH-SGI-V-07502 WH-SGI-V-07502_contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19383 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 19443 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 19503 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 19563 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 19623 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 19683 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 19743 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 19803 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 19863 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 19923 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 19983 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 20043 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 20103 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 20163 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 20223 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 20283 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 20343 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 20403 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 20463 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 20523 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 20583 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 20643 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 20703 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 20763 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 20823 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 20883 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 20943 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 21003 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 21063 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 21123 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 21183 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 21243 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 21303 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 21363 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 21423 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 21483 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 21543 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 21603 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 21663 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31203-30215 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLQI01000007.1 Pseudomonas aeruginosa strain WH-SGI-V-07502 WH-SGI-V-07502_contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31202 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 31142 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 31082 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 31022 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 30962 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 30902 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 30842 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 30782 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 30722 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 30662 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 30602 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 30542 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 30482 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 30422 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 30362 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 30302 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 30242 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //