Array 1 161190-161756 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLE01000008.1 Cronobacter sakazakii strain cro3114A2 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 161190 28 100.0 32 ............................ TCGCTCAGTGTTGTTTCGCGCTGCTGCGCGTT 161250 28 100.0 32 ............................ GTATCAATTGCGCAACCAGGAATAAGCTGAAC 161310 28 100.0 32 ............................ TGGCGCATCCGGCGGCAGTATCAGTTCATAGG 161370 28 100.0 32 ............................ GCAGGCTATGAGGCATGGCGAAACGCCATCCT 161430 28 100.0 32 ............................ AACTCCCAGACCGGAAGGCGGCAGATATCCTG 161490 28 100.0 32 ............................ GTTCATGATCTGCGCCGCACCGGCAGCACGCT 161550 28 100.0 32 ............................ GTTAATGGGTGGGATGCGTGCCGGGTGCTTGA 161610 28 100.0 32 ............................ GATTCAGGCGCTTAACCGCGCCGTAAATAATC 161670 28 100.0 32 ............................ TCCACGCTGCCAGCCCGCAACCGATACACAGG 161730 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCTCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGCAAAACCACATTTGCCGGTAAAAATGCTACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCACCCCGGGGCAGGCGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 88363-87110 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLE01000007.1 Cronobacter sakazakii strain cro3114A2 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 88362 29 100.0 32 ............................. CGTTCCTGTTCATACTTACGATCAGCGGCTGC 88301 29 100.0 32 ............................. TGGCCTACGTTGATTCCCTCAGGCGAGAAAGC 88240 29 100.0 33 ............................. GCAGTGCGAGAAGTTGGCTGCGGAGAATGCGGC 88178 29 100.0 32 ............................. TAATCGAATTCGGCCTGCTTAACGATTTTCAC 88117 29 100.0 32 ............................. ACGAACCCAGCACGGCAAAACTGGCGGCAAAA 88056 29 100.0 32 ............................. CGCAGCTTATTACTCATAGGAGTTTTTCTGAT 87995 29 100.0 32 ............................. GGCTTGCTGATATCAACGCCCGCGAGCTGCAT 87934 29 100.0 32 ............................. CGTGGCGAGTCTTACCGTGTTCTTGATACCGG 87873 29 100.0 32 ............................. CACATCCTCTCCAGCGATTCGTCGCTGCTCCA 87812 29 100.0 35 ............................. GTTTATCATCTCTTCATCTTAACAAGAGGGAACAT 87748 29 100.0 32 ............................. GTTGACGGTTCAACATCTGAACGCGGGCCTTT 87687 29 100.0 32 ............................. TTAGCGACACTTCAACACCCGACCGCCTGGCA 87626 29 100.0 32 ............................. CACCGCGGCATGAGCAACTGCATTACGCTCAT 87565 29 100.0 32 ............................. GGTTTAACGGCTACGGGGCGATTCAGATCTAT 87504 29 100.0 32 ............................. TTGGATACAACCCCTTCAGCATCATGCGAGGT 87443 29 100.0 32 ............................. GATGTAGGCTTGAGCGTCGCCGCTCTTGGCTT 87382 29 100.0 32 ............................. CGTGAAAAGGGATTCTCGGTTAAGGATCTCAG 87321 29 100.0 32 ............................. CGACACGATCCGCCGCCTCGGCTATGAGGCTG 87260 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 87199 29 100.0 32 ............................. GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 87138 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 21 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAACCGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGTGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGTGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116124-115363 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLE01000007.1 Cronobacter sakazakii strain cro3114A2 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116123 29 96.6 32 .C........................... CGGTTTCGTGCCGCCGGTGCAGTCGGAAAAAA 116062 29 96.6 32 .C........................... AAACGTGTCGTGACTGCCTGGCAGGTGGCTCA 116001 29 100.0 32 ............................. ACGTGCATCTCACTTTGCGTCGAACAATTGCG 115940 29 100.0 32 ............................. CGGCGAGTTCGCTGTTCGCGCTGTCGAGAATT 115879 29 100.0 32 ............................. CCGTGGATATTGAGCTATTGAGCGTGCTCGAA 115818 29 100.0 32 ............................. ATCGCAAATATGCAGGCGATGGCAGCCGTGGC 115757 29 100.0 32 ............................. CCTGTCTCCCGAGCCTTTCCCAGATATTCAGT 115696 29 96.6 32 ...............A............. TCCAATAAATTAGGAGGTCGTCGCCGGGCTGA 115635 29 100.0 32 ............................. GTGGGGATCCAACGTGGAGCCACGGACAGTGA 115574 29 100.0 32 ............................. CGCCTCGTACACATCGCATGTGCGCAACTCTT 115513 29 96.6 32 ................T............ ACAACAGAGCGGACGCCATCGCGCATGACAAT 115452 29 100.0 32 ............................. CGTTATGCGCGACGCCCAGCGCGGCATGTGGA 115391 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCAAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACTAGCCAGGTGAAGCAGCTTAACGGTAAAAGTGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAATAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CAGATCTCGGTGACTGGTACCTCACCGCGCTGGACAATACGCCGACCCTGAACGGTTTAGTTCTGAACAGAATACAGGACGCGCTTGATCCAGGATCTCTTGATCGGTATCAGCGCAGTGTCGAACATGAACAGGGGAATGATTTTCTGATTCCACCTTCACCTTTATGTTAGGAAAATAATATGCGTGCAATAGGATATTTGCTTTACACGGCAGTTGGCCTTATTCAGTTCTCCGCAATTATTTCAGGTCTTGAATCATGGTGGGGTTTACACTGGATAATTGCCGGATTGGTCGCTTTCTTTATCGCTTACATTCTGGTGCTTGGAACGATTGTTGGTATTGTGGGAGCCATAGATGTATGGCATTGGGAATGGTGGCAAGCAGGTGGTTTATTCTTTGGTGCTATGCTATTAACCTTTGTTTTTTTGGGTTTTAGTTTGGTATTTGAATGGTTATCCAGCCGAAGAAAATATAATTGAAGTAAGGGAGCGCGCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //