Array 1 182684-183311 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAZ01000010.1 Pseudomonas aeruginosa strain PA-W9 IPC5_10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 182684 28 100.0 32 ............................ GCAGTCCAGCCGCCGAACTGGACCCCGCCCGA 182744 28 100.0 32 ............................ ACTGGAAGAACTTCACAATACCGGAGACAAGC 182804 28 100.0 32 ............................ GAGAAGACGCAACAGATCAGGGCGTCGATCCG 182864 28 100.0 32 ............................ GAGCAGGTTCAGCCGGCTGTTGCGCCTGGTGC 182924 28 100.0 32 ............................ AGTACCACCGCCCTCCCCTGAGCCGTCACCAC 182984 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 183044 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 183104 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 183164 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 183224 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 183284 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 193044-192177 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAZ01000010.1 Pseudomonas aeruginosa strain PA-W9 IPC5_10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 193043 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 192983 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 192923 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 192863 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 192803 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 192743 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 192683 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 192623 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 192563 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 192503 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 192443 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 192382 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 192322 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 192263 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 192204 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 260380-257700 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAZ01000006.1 Pseudomonas aeruginosa strain PA-W9 IPC5_6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 260379 30 100.0 36 .............................. CACTCGGTGAGGCGCAGCGGCGCCGGAACGCCGGGT 260313 30 100.0 35 .............................. AGCGGAACCACGCCGATGCGCATCAGGTGCGCGGT 260248 30 100.0 39 .............................. ACCAAGATCCAGCAGGCGCTGGACAAGAGCGCCCAGCGT 260179 30 100.0 37 .............................. TTCGCTGCTAATATCCTGACCATCGAGCAAATCATGT 260112 30 100.0 36 .............................. AGCATGGCGCCGGCCAGTTGTCGCATGGCATCGGGT 260046 30 100.0 36 .............................. TCCTGTGCTGCCATTCTGTCGTCCACCAACTTCGGT 259980 30 100.0 36 .............................. TTCACGTTGCGGTTCCAGGCGCCGACGTGGGCGGGT 259914 30 100.0 39 .............................. ACCGCGTGCATCAACGAGCGCGACGCCGCCAACGCCCGT 259845 30 100.0 36 .............................. CGCGAAATGCTAACCCTGATGCCGGACATTGAATGT 259779 30 100.0 35 .............................. TGGTTCGCCCCGGCCCCGGTGAAGATGTAAGTGGT 259714 30 100.0 37 .............................. GTTCCAGTGGATGTCCCAGACGGTCAGTGTTGGAGGT 259647 30 100.0 36 .............................. CTTGCCGTCCAGATAGACGCGATCCGGCGAAACCGT 259581 30 100.0 36 .............................. CCCAAGACCTACAAGATCGACGTAGGGCACGACGGT 259515 30 100.0 35 .............................. CCTTTCTACCTGGAGATCAAGATGGATCAGTCAGT 259450 30 100.0 35 .............................. TCCATAGAGACGAGCCAGGCGCCCCACCCAGTTGT 259385 30 100.0 35 .............................. AGTTCTTCAGCCATTGCCGTTCTCCTTGTCCTGGT 259320 30 100.0 36 .............................. CAAGCTTTGAGCAGTGCAAGCGCCGCCCCGTCGCGT 259254 30 100.0 37 .............................. CATAAGGAAACATTAACGGTTTCCGCCAGCACCGCGT 259187 30 100.0 37 .............................. TTTTCTCTGTAATGATCGGCTATCTGCTGATGTCGGT 259120 30 100.0 35 .............................. CTTGGTCACGTCGAATATAGAGTCAGCGAGATCGT 259055 30 100.0 36 .............................. ACCATGATTGTACCAAGGAGGTACATTTATGGCCGT 258989 30 100.0 37 .............................. TGGAGCAGCCAGGTGCCGGTTTCCGGAACAGAATCGT 258922 30 100.0 35 .............................. ATGTTCTGCCGAGCGCGATAGCCGCCGCTGTGTGT 258857 30 100.0 36 .............................. AACCGCTCCACGGCTGGGGTGCGCCTGGAAATGCGT 258791 30 100.0 35 .............................. TGCGAGTTCGGGGAGCAGTCGACTAGTTGCCGCGT 258726 30 100.0 37 .............................. ACGGCGCCGCCCCTGGCGCGGACACACTCTCCGCAGT 258659 30 100.0 36 .............................. CGTGCGCGCCGTCCCGCTGCGCTGGCAGCGCCTGGT 258593 30 100.0 37 .............................. AACGCCAGTATCAGCTCGTTGAGCATATGCCCGTAGT 258526 30 100.0 39 .............................. CGACAAGCGTCAGGTCGTCGGCGTGGGTCGGCACCCAGT 258457 30 100.0 36 .............................. AGCACGTCGATGGTCGGAATGTAGGTGTAGCGCTGT 258391 30 100.0 37 .............................. ACCGTGTTCCTGAAGCTCAAGGATATCGGTGGCAAGT 258324 30 100.0 35 .............................. GGCTCCGGTCAGAAGATGTAGGTTTGTTGGCTTGT 258259 30 100.0 36 .............................. AATGGCTGATGTACGACCGACGAAGCTGCAGAACGT 258193 30 100.0 37 .............................. CTCGATGCGGCCGACCGGGTTTTCGATGGCCCATAGT 258126 30 100.0 35 .............................. TTCTCGATCGTGTAGAAACCGCGCTCCTGCAGCGT 258061 30 100.0 37 .............................. ACGCCGAATCGCTCGGATGGGTCACCGACCGCGCCGT 257994 30 100.0 36 .............................. GCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGT 257928 30 96.7 35 ............C................. AGCTCGCTGACGTCGAGGATGCGGCGGTGGAAGGT 257863 30 96.7 37 .................T............ CCCAGCGGGCGGTGGGAGGCATGAAGAAAACACCCGT 257796 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 257729 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 99.4 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTTATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGTCGAAAGAAAGACTAGGTTGCGCTGCTCGTCGCACATGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCTTGCTCCAAGGTCAGCGACAGTTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //