Array 1 30-974 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJLV01000116.1 Limosilactobacillus fermentum strain NBRC 3959 sequence116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30 29 96.6 32 ............................C CCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC 91 29 100.0 32 ............................. ACTGGTGATAACTCTGGTCGCCTGATGGTTTT 152 29 100.0 32 ............................. AGCTAATGATTTCTTTGGTAGCGTCAGCCAGG 213 29 96.6 33 ............................C GGATGTGCATCACGATCATGAAAAACGACCACA 275 29 100.0 32 ............................. AGTAAATGGTATCAGGGGGCCGGCGAGTTACA 336 29 100.0 32 ............................. TGCTGACAAGGTATTTAAGGACGCCGAGAAAC 397 29 100.0 32 ............................. TGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG 458 29 100.0 32 ............................. TAAGCCGTTTAGCCATTGCAGCGTTGCTCATA 519 29 100.0 32 ............................. CAGTGCCCACCCGGTGGACGTTAGCTCTATCC 580 29 100.0 32 ............................. ACCGGCGGGCGAAGTTGGTCAACCTCGTCATT 641 29 100.0 32 ............................. CTTGCTAGACGCTTTCTTCCACTTTGAAAGGG 702 29 100.0 32 ............................. ATATCAACGTTTTAAGTTGGTTAGTGTCCCAA 763 29 100.0 32 ............................. TGGAAGAGCTGGACGTTGTCAAATGACGGGAA 824 29 100.0 32 ............................. TAAGTATTCTTAAAGGAGGTCACACATTACTG 885 29 100.0 32 ............................. ACTTATCCATACCAACTTGACTAATTAAATCA 946 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : GGAAATACATCCCAAGTTTATCTAACTGGG # Right flank : TGGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 226-681 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJLV01000131.1 Limosilactobacillus fermentum strain NBRC 3959 sequence131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226 29 100.0 32 ............................. TAAAGGAGAATACTATGATCAACAAAAAAATT 287 29 100.0 32 ............................. TTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG 348 29 100.0 32 ............................. ATCAGCTTGTGCTGCACTTGCCGATGATTTAG 409 29 100.0 32 ............................. GATATGATCTACGATCAGGGAACCTATGCTTC 470 29 96.6 32 ............................C ATCTTGCCTACGATTGACACCTCAACCGGTGA 531 29 100.0 32 ............................. AGGGACACAAGATAACCTTGCCGAGATAATGA 592 29 100.0 32 ............................. CGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG 653 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : AATTATTTCAAATCGTATGATTGATTTAATGCCAATTATAAAGAAGGATCAAAAGTTTTTAGATAATTATCGGTTAGCAACAGTTCTTAAGAATTATGGAATTGAGAATGACTATCCGCATAAATCTATATCTGATGCAATGGCTACTTTGGACCTAGCGCTTAAACTAATCAAAAATGACAAACTAAGGATCTAAAAAAGGCGTCATATAGGGATCTGTTTACGG # Right flank : TTAATAGCAATAGTCTACCGTATTAGGAGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-672 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJLV01000133.1 Limosilactobacillus fermentum strain NBRC 3959 sequence133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33 29 100.0 32 ............................. TTGTTATATGAGTAACCGCACTTAGCATTAGC 94 29 100.0 32 ............................. TAAATACTTAAACTACAAGGTCGATGAAAAAG 155 29 100.0 32 ............................. TTGTTATATGAGTAACCGCACTTAGCATTAGC 216 29 100.0 32 ............................. AGGTGGCAATAGGCCATCCCCAGGGGTCTCCC 277 29 100.0 32 ............................. TATAGTCGGCCACTGAATGGACTTCCGCATCA 338 29 100.0 33 ............................. ATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA 400 29 100.0 32 ............................. TTCCAGTCGTGGAATCGATGCTGACCGTCGGT 461 29 96.6 32 ............................C CAACAAAGCGGCAATCAACAGCAAGGACCAGC 522 29 100.0 32 ............................. ATGCAAGAGTGGCTTTATCAAGTCGCCAATGC 583 29 100.0 32 ............................. TATTTGTAAACCATCACTGCGTTTACCGCTGT 644 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : CCCGGTTTCTGTATCTACTCCAACTTCATCGAG # Right flank : CAGATTCCGGTCAAGTCCAAAATGTTGGTGTAAATTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCATGTATGTGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5738-5909 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJLV01000066.1 Limosilactobacillus fermentum strain NBRC 3959 sequence066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 5738 35 100.0 33 ................................... TATTTGCTTGGAAGTTCGTCAAGCCTTGGCTTG 5806 35 100.0 34 ................................... GATGCGACAGGTCAAAACGCCCAAATTGAGGGTA 5875 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 100.0 34 GTCGCACTCCTTCGCGGGGGTGCGTGGATTGAAAT # Left flank : CGAGGCGATTTGGATGAATATCCACCTTTTCTCTGGAAGTAGGTGCTTTAAATGTTGGTAATTGTTAGTTATGATGTAAATACAGAAGACCCAACTGGGAGAAGACGATTACGTCACGTGGCAAAGATTTGTAAGGATTACGGTCAACGGATTCAAAAGTCAGTATTTGAATGTAATGTTGATTCCACTAAGCTTACTGTCTTAAAGCAACGTCTTCTAGCGGAATATGATGAAGATACAGATAGCCTATGTTTCTTTAATCTAGGTAACAAATATCAGAATAAGGTAAGCCACTATGGTTCTAATTCGGTGGTAAACTTAGATGAACCGGTAATATTCTAGTATTATCAGTAGTGCGAACCTAAAGTGAACATAAATTCTTTAAGGATTCGCACCAGAATTTTGGTGATTTTATTCAAAAATCACACTAACAGTTGCTTTTTCAGCTGTTTGACACCCAATATGTAGAAGATGGAGTTCTCTATTTGCTATATGTTGCG # Right flank : GCTTCAGTCGTATATCGACGCCGCCGACCAGTTTGTCGCACTCCTTCGCGGGGGTGTGGTCCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTCGCGGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //