Array 1 222252-224310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGRN010000001.1 Streptococcus agalactiae strain bd_2 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 222252 36 100.0 30 .................................... TCTTTCTCTATCTCTATCTCTGTTGGAACT 222318 36 100.0 30 .................................... TGATTTGCAAGTTATATCAAGCGAGATAAT 222384 36 100.0 30 .................................... AGATACTGCCCTGTACCAGCAGAAGCAGCA 222450 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 222516 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 222582 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 222648 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 222714 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 222780 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 222846 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 222912 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 222978 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 223044 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 223110 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 223176 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 223242 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 223308 36 100.0 73 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 223417 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 223483 36 100.0 30 .................................... CGGACGATCTATCAATTTACCGCAAGCCGT 223549 36 100.0 30 .................................... TTTTACAAGTGATTTATTGTCGAATACCTT 223615 36 100.0 30 .................................... CGGACCATCTCTCAATTTACCGCAAGCTGT 223681 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 223747 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 223813 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 223879 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 223945 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 224012 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 224078 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 224143 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 224209 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 224275 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 31 36 100.0 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //