Array 1 34224-34849 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTO01000059.1 Delftia tsuruhatensis NBRC 16741, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 34224 32 100.0 35 ................................ CCTGAGTAGGAGTACGCCCAACTCCACCAGTCCCG 34291 32 100.0 33 ................................ ACATCGGCGATGGCTGTCGTGAAAGGGTCGGTC 34356 32 100.0 33 ................................ ACTGCCTGCGACCGAGCTGGATAGCTCCTGTGA 34421 32 100.0 34 ................................ TACAGCGAAGCCGAGCGCGCGGAGATCCTGCAGC 34487 32 100.0 35 ................................ CACTTGAAGACCAGCACGCCCTCGGGCTCCAGCAC 34554 32 100.0 33 ................................ TGAGGCCGCGATGAAAGCCACCGACACCCCTCC 34619 32 100.0 34 ................................ AGCGAGTTGCTTTCGAGCGAATCGCCTGCTTGTG 34685 32 100.0 35 ................................ TCGAGCTCAAGCGCATCCAGACCTTGATGGACAAG 34752 32 100.0 34 ................................ CTTGGCCTGGGCTGCGTCGTGGGCCTTGCGGGCT 34818 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CCGGCGATGAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGAAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTAAGCCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCAGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGGGCGAGCGAATGGCTGAACGCCGATCCCGCAGCATGACAGTGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCC # Right flank : GATACAACTGACTAGGTCAGCGCCGAAGGTGCGGTCGCGTGGGCTGCTGCCGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 75593-73510 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTO01000043.1 Delftia tsuruhatensis NBRC 16741, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75592 32 100.0 33 ................................ TTTTTCGAGCTCACGCAGACGCACAGCGAGCTC 75527 32 100.0 35 ................................ TGGCGGTAGGCCCGGCTGTTGTTCACTGCCTGCGA 75460 32 100.0 34 ................................ GGTGCTGGAGCGCCGCAAGGAGATCGCGCCGAGG 75394 32 100.0 34 ................................ ACTCTGCGGGGCAAATCGTTTCGATGGCCTTTTT 75328 32 100.0 34 ................................ ATGAGACCCCAGATGACGACGCCGGCCGCCATGA 75262 32 100.0 34 ................................ TGCTGCACTCTGTATATCAATCCCGACCACAAGA 75196 32 100.0 35 ................................ CTTGAAACGGAACTCGCTCATTGCGACGCCCTATC 75129 32 100.0 34 ................................ GGCTCTGGACAGATCGCGAGTCCGAGCCCCAGCC 75063 32 100.0 33 ................................ CTCAAGGACGAACTGACCGAGGTGCTGGAGCTG 74998 32 100.0 34 ................................ ACCCCATCGGACTTACGCCTGCTGGGGCGCTGGG 74932 32 100.0 34 ................................ AGGGCGTCAGTAGACAGCGACCCGAGAGCGGTCT 74866 32 100.0 35 ................................ CAATTGATAGCAACGGAACACGACAGCCTCACCGT 74799 32 100.0 35 ................................ TCCCCGAGATTGAATGCAGCCCGGTCGTGTCCAGG 74732 32 100.0 35 ................................ GTCCATGTCGCTGCTCGCTGCGTCCTCTTGATTGG 74665 32 100.0 36 ................................ TGCCAGGGACAAACACCATTGCGCCCCCTGGCACTG 74597 32 100.0 33 ................................ GGCGGCGTGCTGGACAAGGCCCGAGGCGGTGCC 74532 32 100.0 35 ................................ GGCGCCAAGGCTGTTGCAGCAACTGGCATGGCCAT 74465 32 100.0 34 ................................ AAGGCTATTTGGGACATGGCTACGGACCTTGTGT 74399 32 100.0 34 ................................ GCAGAGCTGATCAAAGACCTGACCACCGAAGACC 74333 32 100.0 33 ................................ TCTTTGAGCGTGTCCAGCTGGCTGAGCAGGGGC 74268 32 100.0 34 ................................ CACGGCGCCGAGCCGCCAGCGGACTGGCGCGAAG 74202 32 100.0 34 ................................ TAGGGCGACGATTTGCGGCCCGCTGTGCGGCAGT 74136 32 100.0 35 ................................ TTACGGGCGTAGTCGTCCCGGTAATAGTCTCGATC 74069 32 100.0 34 ................................ CTGCCTGCGACCGAGCTTGCTGGCCCCTTCGACG 74003 32 96.9 34 .......T........................ GTCGATGACGTACAGCGGACCTTGATCCTTGTCG 73937 32 100.0 34 ................................ GTGCAGGCCGGCAGCGACTGGCGCAGCCTCAACC 73871 32 100.0 33 ................................ TATGCCGTGGGCCTTCGCATTGGGATTGCAGAG 73806 32 100.0 35 ................................ CCGAACGCTGGATACTGGCGGAGACTGTCCCTTTC 73739 32 100.0 34 ................................ CGGTCAAACATGTGCACGTAGACGGTCTGGAAGT 73673 32 100.0 34 ................................ CAGTCCCTGTTGGTCAAGGCGAACCGGAGCATGC 73607 32 100.0 34 ................................ ATCACGCAGGACCCGACGCTGGTGCACCAGACTC 73541 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ==================================== ================== 32 32 99.8 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGCGTCAGCGGCTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAACCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCGGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCTATCCTGATCAACCGCATGAAGGTGGCTGGTAGCTGATTGGCTTGCGGCTGCGCATGCTGATGAAAAGCGGCCCGAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGCCGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACTGCGTCTTTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGCGAAGCTTTTTATGCAGTGGTACGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGACGGGTTCTGGCAATCGCTGACAACCCGATGCCTGCATGTCGGCAAGGCGCTGTCCTACCGGATGAGCAGGGTTTGGGAAGGCGATGCGACTGATTCAAATTGTCAAATTTGTTCCCGGATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCGTGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCTGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTCGCCAGGAACGGCCTGGTCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 99139-97110 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTO01000043.1 Delftia tsuruhatensis NBRC 16741, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 99138 32 90.6 36 CCA............................. ATTGCAGGAGCTGGCGGCGGTGGGTCTAGCTGGGAG 99070 32 100.0 34 ................................ ATCATTCGGGGGTGCGGGCGTCACCTGAACAACA 99004 32 100.0 35 ................................ CGTTTGCTCCCACCAATTAATTACAACCGGCAACA 98937 32 100.0 36 ................................ ATGAGGTAGGCCACAGGCGCATAGGCCTCGACACGG 98869 32 100.0 35 ................................ ATGCGCTACCTGCAGAGCCAGCAGGCGAGCCGTCT 98802 32 100.0 36 ................................ CGTCCCACCAGAACCAACTGCCGAGACCTGTGTGCA 98734 32 100.0 34 ................................ CTTGCTGCCGAAGTAGAAGGACCTGCCTCGGCCA 98668 32 100.0 34 ................................ GTCGTATGCAGGAGCAGTCCAGGGACGATCCGAG 98602 32 100.0 35 ................................ CAACAAGCGTCAAGGCGGGCGAAGCGTCAGCGGAC 98535 32 100.0 34 ................................ ATGATGTGCCTGCAGATGGCCATCCCGCCCATTG 98469 32 100.0 35 ................................ CCATGTGCGGCTGTCTTTGACGCCGCTGCGCTTTT 98402 32 100.0 33 ................................ GTACTGCCCGCGCTCCTGCGGGCTCTGCTCGCT 98337 32 100.0 35 ................................ GCCGCCTCGGCCGCCGTGTCCGCTGACTTCTGCGC 98270 32 100.0 33 ................................ TTCGCCGACAACCCCGGCGCGGCACTGCTGGCG 98205 32 100.0 36 ................................ CCGTTGATCCAGTTCGGGGGCTTGCCCCGGCCGGTC 98137 32 100.0 36 ................................ TGGGCGATCAGCGCGTCCTTGAACGCCGTGTACAGC 98069 32 100.0 33 ................................ GAGTTCTCCAGCAAGGAGACCCAAAAGGGCCTC 98004 32 100.0 33 ................................ AGGCATATCGGCCACCCCATCACGCTTGTCGCT 97939 32 100.0 34 ................................ ATCGACCACCTCCGCCAATGGTCAGCGCCTTCCA 97873 32 100.0 35 ................................ TGGAACGAGCCAGCGCCGCCGCCAGGGGTGAACAG 97806 32 100.0 36 ................................ GTTCCCGGTCTTGTTGTGCTCGCGTGGGTTACTTGT 97738 32 100.0 35 ................................ ATGCTAATGTGCGCGCGCTAATCGGCCGTCATGTG 97671 32 100.0 35 ................................ CAGTCCATGACTAGTAACGTGGGTCAGGCTCGCGA 97604 32 100.0 34 ................................ ACGCCCGCCGTGGCGCCCTGCACCATACCAGGAG 97538 32 96.9 33 .........T...................... TCCAGCGCATCGTCGCGCTCGTATCGCACCCGG 97473 32 96.9 35 ..........T..................... TCCTGATACGGTGAAGACGGTGCGGGGTCTGCGGT 97406 32 100.0 34 ................................ ATCCACTCGTTGTAGTCGTAGAACTTCTCGCCCT 97340 32 100.0 33 ................................ ACCGCTCAGGTGGCTGCCTTGCAGCAGAGGCCG 97275 32 100.0 35 ................................ TTCGCCCGGATGCCCGAGATCAACGCGAAAGCTGC 97208 32 100.0 35 ................................ AAGGCCAAGGTGCGCCATTACGATCACGGTGCACC 97141 32 90.6 0 ..........T....AC............... | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 99.2 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AAACCGGCAGCAG # Right flank : CCCTGCCGCCACAGCAAGCGCCCCACGCATTTGAAACGAATCGCCTGACTCACTCCTCGCCGCGCAGACCGCCATTGAGAGAGAGTCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCCAGCGAGGGACCTGCATGCCCATCGATCCGCCGGATATAGGGAGATGTGAGCACAGCCATGGCATTGCCATCAGGCCCGAGGATGGGGCAGGAGATGTCCACCACGCCATAGGACTGCAGGCTTTCGCTCTGCCTGTAGCCCGTGCTGCGTATCTGTTCCAGCATGTCGTGCAACTGCGTCTCGGGCAGTGGCACCTCGCCTTCCAAAGGCGTGTGCTCGGCCAGCATCTGCGCGCGGCGTTCGGGTGTCTGGCAGGCCAGCAGTACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATTGACAGGCCCCAGTTCCCGGGGCCGGGGACCTGGGCCACGATCAGGACATTGCCACGGTCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //