Array 1 266-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_AELY01000030.1 Methanobrevibacter smithii TS95B Contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 265 37 100.0 36 ..................................... ACGTACTCTACCAGGCACAGATATAAGAGTCCAATA 192 37 100.0 35 ..................................... TACAACGAAAAACAAATACCAAGAATGGTAGAATA 120 37 94.6 35 ..................G.......T.......... ATATGAGCAACAAATTAAGCAGAGTAAAATCTGCA 48 37 94.6 0 ..................G.......T.......... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 97.3 36 GTCACAATCCTTATTTTAATAGATGGATTTCTGCAAT # Left flank : GCACTCCCCTTTTGAATACAGTGCCATATCATCAGCAGGATTAATTTCCAATGAATTGTTAAAGCACTCCATAGCATCATCAAATAAATCATATTCCATTAAAATTTTACCCACATGAAACCAGATAAAAGGGTTTTCATCATCCACGCTTAGGGATCTGTTGTAACACTCCATTGCTTCAACATATTTTTCAAAATGATTTAAACAGCATCCTTTTAAAGCCCAAAGATGGCTGTTTTCATTATCTTTTTTTAAAAGCTCATCACATAATTCCATAGCTTTTTCATATTCATAATCATTCATAAATTTAGAAATGATTTGCAAACTTTCAACATTCATATATAACACTGCAACAATTTGTTAATAATCTTTTTAGAATTCACTTTATAAAAATCAACTGGAAATAGTTGATTATGATAAAAACTCATTTAAGCCTTGTTTTAGTAGATAGTTTTTTTTGAAATACCATTTAGAGAATTTATTACTACATATAATGATAT # Right flank : TATAAGCAAATG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATCCTTATTTTAATAGATGGATTTCTGCAAT # Alternate repeat : GTCACAATCCTTATTTTAGTAGATGGTTTTCTGCAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 262-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_AELY01000004.1 Methanobrevibacter smithii TS95B Contig29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 261 31 100.0 38 ............................... GAAATAGGATGGTGGAATGTATTATTCTTGATTTTGAT 192 31 100.0 33 ............................... AGCTTGGGATGTTTACCTGATGAGGATATGAGT 128 31 100.0 35 ............................... AAAATCATTCCATGATTTTGAGGAAAAATTCTTCA 62 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 4 31 100.0 36 GTTAGAAATAAGACTATAATAGGATTGAAAT # Left flank : AGAAGCTAGTGAAAGCGAGTTTAAGATAATTCATGATGGTTTAATGAAAATAATTGACACAGAGGTTGATTCAGTTATAATTTATAAATTAAGAATGGCTGATGTGATGAATCGTGAGGTTTTAGGTATTGAAAAAGCACCTATCGATGAAATTTTATAAATTTGATATTTTTAATTTTATTTAAACTGTTAGACTTGATAAAATAAATTTTAAAAGCTTTGTTTATCATATATTTTATGTTTTGATTATTTTTTAGCTATTTGAAAAATTTTGTTTTTTTATTATTTTTTAAGTTTTATTTATTTAAATAAGTTAATTCTCTTTTAAATAGGTTGATATTTTATTTTATAAATTTTTAAGTTTTATTTTTATTTTAAGTTATTTAGATTTGTTTGTTGATACATATAAATAAAAAACATTTTTTGTTATCGACAAATTTAAGTGTATGAATAAATAAATTATAAATTGTTTTAGCCCTTTTTGAGAAAAAATGTGGCCT # Right flank : TAATCAATTAACTAAAATAACATCCTCCTTAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 140351-139857 **** Predicted by CRISPRDetect 2.4 *** >NZ_AELY01000003.1 Methanobrevibacter smithii TS95B Contig38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 140350 31 100.0 34 ............................... CAATACTTGTAGTGTGACTCATATGCTTCACACA 140285 31 100.0 32 ............................... TCAACCCCTGAAATTTTTCATTTCAGAAGGAG 140222 31 100.0 36 ............................... TTGTATTCGTTTAGCACTCCATCGAAATCCACACAT 140155 31 100.0 37 ............................... CATCTTGCTTATCAGGAAGTAAGGTTCACCACAACAG 140087 31 100.0 35 ............................... AAGGATAATCCTGATACTCTGAAAGGATTTGCTTT 140021 31 100.0 36 ............................... TTCAAAACTCTTGGGACAACTTCTCTGCAGAGTATA 139954 31 100.0 36 ............................... GTACTTCACCGGACTCCATGCCTTCAGACCATTCCA 139887 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 8 31 100.0 35 GTTAGAAATAAGACTATAATAGGATTGAAAT # Left flank : | # Right flank : TCATTTTGCACCTATTGATATATAAATTTAATGATGGTTAGAAATAAGGCACTGTCAATAACTTTGGTGATGAATGCCTCGGAAGTTTCTCTGCACCCAGTATTTGGTTTTGAGAGAAAATCTTGTCCTAGCTCCTTCAAAAGTTCTTAATGTTTTTTTAATATGCTTAGGGAAAACTTTTTGAAAGAAATTTTCAATTTTATTACTTGTAGTTGGAACATTACTATTTTCAAGATGAAATGTTATTGTTTTAAAGTAAGGAATGATGAAAAACCACAATAAATTAAAAATAACTTTCGGCAAATTGTTTTGTATACTAATAAGATAATCTCTACCTTTTTTAGCAGATTCTAAATCATTAGCATCTAAAACATCAAAAACTAATTGTTTACAATAATTTAAGTATTCCAATTCTTCATCAGAATAATTATTTCTTTTCTTATTCTCCCTAATGTTCCTGTTTATCTTTTGTTTTGTGTGAAACATACAGAATTGATGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //