Array 1 40584-36055 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRFM01000053.1 Acinetobacter baumannii strain AB-HZ-S04 sp_sm_4_ctg053_234286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 40583 29 96.6 31 ............................C TAAACGTTTACCACTTGCAGTTGTTGTTACT 40523 29 96.6 31 ............................T ACAAGGCCAATTGGCGTGATTAAATCGCTTA 40463 29 96.6 31 ............................C AAAACACCCAACAAAGCGGTGCCGAGAACAT 40403 29 100.0 31 ............................. AGCAGAACAGGCCGCTAAAGCACTTGCGGAT 40343 29 96.6 31 ............................T CTTTACCATCAGCCGTTTTGCCTGACTTACC 40283 29 96.6 31 ............................T CGCTCGGAAATGGCAGACGCTTATACAATAT 40223 29 96.6 31 ............................G TGATTTTTGTGTTTGCTCTGATCGGTAAAGT 40163 29 100.0 31 ............................. GATGGCACTACCAGAGCTACTGATTTAGATC 40103 29 96.6 31 ............................T GAACGTCAGATCTTTGCTGACATCGAGGGGC 40043 29 96.6 31 ............................T TCAATTATTTATTCAAAAGATAACTGGTTCT 39983 29 100.0 31 ............................. ATAACGAAACCGATAGAAAGCTTTAATTTGA 39923 29 100.0 31 ............................. GCACGCCCATAATAAGAAAGGTAACCATTTC 39863 29 96.6 31 ............................T TACTTTCCGCTTTAGTGAACTTCACCTCTAC 39803 29 100.0 31 ............................. AGGGGGAAATTTAAGAGCGAGAAAAACAGAA 39743 29 96.6 31 ............................T AGTCGCCATGTTCAAGAATATCCAACTATTC 39683 29 100.0 31 ............................. ATCGATTTTGAGGGTTTGAAAATCCCAGTTC 39623 29 96.6 31 ............................T CTAAATACTTAGATGGATTGTTTAAATTACT 39563 29 96.6 31 ............................T TCATCCATTAAGATTAGCAAGCGTTTAGCTT 39503 29 96.6 31 ............................T GCAAGAAGTTTTACGAATGCACTGGCTTGTG 39443 29 96.6 31 ............................T TCGATACGAGCAGATTGCTCTGACCATACGC 39383 29 100.0 31 ............................. TAAGCCTGAAGATGAAAAGAGATCTATCATC 39323 29 100.0 31 ............................. GAACGGCGAAAAGATTTATTCACGTGTACGC 39263 29 100.0 31 ............................. AGTTGATGCTGGTTCAGATGCATTTAATGAA 39203 29 96.6 31 ............................C TTCCTGTTTATCTATGAAGTTAAAAATCCAA 39143 29 100.0 31 ............................. TTACGAATTGCCGGATACATAGAATCGCCTG 39083 29 100.0 31 ............................. ATATATAGATAGTAGTAGTAATGCGCGTGAA 39023 29 96.6 31 ............................T TAAGCAATTGCTCTTCAGTCATATTGAACTG 38963 29 96.6 31 ............................T AAAGAGCTGAATATCTTCAACTATGACGAGT 38903 29 100.0 31 ............................. ATAAGCCCGCCCGAAGGGAACGCCCAAAAAA 38843 29 96.6 31 ............................C AAAACAACTCAACAAGGCCCTAAAAATGCTT 38783 29 96.6 31 ............................T CCAGTAGATAATTACAAATCACCTGAACCTC 38723 29 100.0 31 ............................. GTACCTATTCTCTATGGACGTCGTGAAGTTG 38663 29 100.0 31 ............................. CCCGTTGGGATGGCTCTGTAACTTTCGGGAA 38603 29 96.6 31 ............................G AAGATACAAGGAATACCAGCGACTTTGAATT 38543 29 100.0 31 ............................. TTCGCGTAAGTAAAACAGATGTATTTTGGTA 38483 29 96.6 31 ............................C ATATCGTTGTCAATGCGGTGGCCTGCTGCTT 38423 29 100.0 31 ............................. TAACACGCTCTTGCATGTCTAGCATCTTTTC 38363 29 100.0 31 ............................. AACTAATCTTACTGATAAGCGCACAGTAGAT 38303 29 96.6 31 ............................T AAAAAAGATTATATTAAGTTTTATTTCAAAC 38243 29 96.6 31 ............................T AATTCTTGGGTGGTTCTGGTAGTGGCATCCA 38183 29 100.0 31 ............................. ATGTAAATTCCGTCACCTGTCATGTCTTCTA 38123 29 100.0 31 ............................. GTAACCAAAATTATCATTTTATAAACTCCAA 38063 29 96.6 31 ............................T CTCGAGAGCTAGCAGAGAACGAGTTTTTATT 38003 29 100.0 31 ............................. GTCTGGCAACTGCTGTGAAAAGTCGATTTCT 37943 29 100.0 31 ............................. ATCTGTTATCAAGCCTGGTAGCCAAGTTGCT 37883 29 96.6 31 ............................C TTGTAACATAAGCAAGAAGGCGAAACTAGAT 37823 29 96.6 31 ............................T AGACAAATTGATAGATCAAAGCATTGCGCGA 37763 29 100.0 31 ............................. ATGCAGCTTTTCGAAAAGTTCATTGTGTTCA 37703 29 96.6 31 ............................C GCAGATTTACGGATGCCTGTAACTGTCATAA 37643 29 96.6 31 ............................C TTAGTTGTGGCGGCGCGTCAATTGGCTCGTA 37583 29 100.0 31 ............................. TTTTCGGTAAACGGCGCTGCTAACGCCGTTC 37523 29 96.6 31 ............................G CTTTGGTACGGTTATTTGTGCAAAGGATGAA 37463 29 100.0 31 ............................. GTTGCATGGGGTATAAAAGTTACATCTAGGC 37403 29 100.0 31 ............................. ATTAGGCACAAGACAGGAATCGGAAGCCCTA 37343 29 100.0 31 ............................. AACAGCTCGACGCGCAATATGAGTTACATGC 37283 29 100.0 31 ............................. AATTGGTATGAAGAGCCAGTTTCGCAGTTCA 37223 29 96.6 31 ............................T AAGCCTAAATTTCCGTTTGCTCCGGCAGACA 37163 29 96.6 31 ............................T TTGATGCGGCACCTGAGTCAGAATTACTGGT 37103 29 100.0 31 ............................. CAACTGGCTCGACATGTTGATCAATCATATC 37043 29 96.6 31 ............................T AGCACATTAAATATAGTTTTTGATAATCAAT 36983 29 96.6 31 ............................T TCAGGGATTTCAAAAGCTAAGCCGGTTCCAA 36923 29 100.0 31 ............................. GATGTCGTAGAAATTCTTTTGAATCCTGATC 36863 29 100.0 31 ............................. GCATAGTGAGCTATTGCAGCCGCTTTAGAGT 36803 29 96.6 31 ............................T GCAAATAATCGCGTAAAATATTATCCGGACC 36743 29 100.0 31 ............................. ATTGGAGTAATTAAATCGCCTAGATCAGAAG 36683 29 100.0 31 ............................. CAGTATCACTGGCACGATTTATGTAATTAAA 36623 29 100.0 31 ............................. TCTGCTGTAGTCGTACTAACCACGCTACCGT 36563 29 100.0 31 ............................. ATATTGTTATTCAATCACCGTAATAAGAAGG 36503 29 96.6 31 ............................T ATCAATTAGGCACAAGAGAAGAATCGGAAGT 36443 29 96.6 31 ............................T TATCCTGGTAAAACAAGCCCATATCTTGAAC 36383 29 100.0 31 ............................. ATTGGAGTAATTAAATCGCCTAGATCAGAAG 36323 29 96.6 31 ............................T GAATTCTCTCATCTGGCAAAGACATTAAACT 36263 29 96.6 31 ............................C TGATTTATACCACGTTTACGCACTTTAGCTT 36203 29 96.6 31 ............................T TGAATCGTGGAAATTAATAACACCATGTAAA 36143 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTGTTG 36083 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 76 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGATACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAATAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGAACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46136-47065 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRFM01000053.1 Acinetobacter baumannii strain AB-HZ-S04 sp_sm_4_ctg053_234286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46136 28 92.9 32 ...C........T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT A,A [46138,46142] 46198 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 46258 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 46318 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 46378 28 96.4 32 ...A........................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 46438 28 100.0 32 ............................ ATCAAAAGCTTGGTGAAGAGCATGGTGCACTA 46498 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 46558 28 96.4 32 ...A........................ AGAACAGTTTATTCGCGAATTCGGGGTGGAGA 46618 28 96.4 33 ...A........................ CAACCGGCTAAGCTGCATGTTCTTGAGGCGCTG 46679 28 100.0 32 ............................ GATAACGAACACACGGCGGCGTCGTTGTGGAA 46739 28 100.0 32 ............................ ATACAGGACGGCTGGCAAGTGGACGGGCATGA 46799 28 100.0 32 ............................ AGTGGGATTGTTGCAAAAAGGATTCGCTTTCT 46859 28 100.0 32 ............................ ACGAAACTAAGCGGCTCATTACCGGCGATAAC 46919 28 100.0 32 ............................ TTGATAATACGACCTATGAAATGATTGGTACT 46979 28 100.0 31 ............................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 47038 27 78.6 0 A..T........TC........C.-... | A [47042] ========== ====== ====== ====== ============================ ================================= ================== 16 28 95.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TCTTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTATTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCATTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTAT # Right flank : ATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCAGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGGGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //