Array 1 273606-274793 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSN01000001.1 Escherichia coli strain EP414 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273606 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 273667 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 273728 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 273789 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 273850 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 273911 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 273972 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 274033 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 274094 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 274155 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 274216 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 274277 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 274338 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 274399 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 274460 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 274521 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 274582 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 274643 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 274704 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 274765 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 300492-301495 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSN01000001.1 Escherichia coli strain EP414 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 300492 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 300553 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 300614 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 300675 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 300736 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 300797 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 300858 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 300919 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 300980 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 301041 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 301102 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 301163 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 301223 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 301284 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 301345 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 301406 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 301467 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //