Array 1 44810-45937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMV010000002.1 Listeria monocytogenes strain 2014L-6160 NODE_1_length_1202857_cov_15.6283_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 44810 29 100.0 35 ............................. GCATCAATAATCTTAGGTAAGTTTTCTATCAAAGC 44874 29 100.0 37 ............................. AACGCAGATTTAAGTGCTTCTCCTACCTGCTGGCAAA 44940 29 100.0 34 ............................. ATCCCCATAAAGTAGTCGGTTGGGACCCCTACGA 45003 29 100.0 34 ............................. CTGTTTTAGCAGCTCCTGGAATACTTTTAATAAC 45066 29 100.0 34 ............................. TTTTCAGTAAGACCATTTCCATTTGCACCTTGTT 45129 29 100.0 37 ............................. AAAACTTCCGCCGCAATATTGATTTTTTCAGTTTCAG 45195 29 100.0 38 ............................. TTATAATCAACAATCATCCCTTTAGATGAGTTTAGTTT 45262 29 100.0 35 ............................. ATTTAAAAGCCCCTACATTGAGTAAGGGCTTCATT 45326 29 100.0 36 ............................. CTATATTCTCTATCTTTTCAATGTCTTTGGAGACTT 45391 29 100.0 37 ............................. TTTTGTCTTTTTTCTTCTCGGCCTGGCGTTAGAACAG 45457 29 100.0 34 ............................. TGTATTCTCTCATTATACGCCTGGAACAGATGCA 45520 29 100.0 34 ............................. ATACAGCACGAACATTTACTAGTATTCAAGAAAA 45583 29 100.0 36 ............................. TAAATTTTTTGTTGATAAGCATGCAGGAGCAAACAT 45648 29 100.0 35 ............................. CAACCTGCTCTTTTAAAGAGTAAGTGTCGACTAAA 45712 29 100.0 36 ............................. TACTTAATCATGAATTACGGAACACCGGATAAATCA 45777 29 100.0 37 ............................. CCAGGATATACAATTGACAAAACAATTCGTAAAGTAA 45843 29 100.0 36 ............................. GACATTGAAAAATGGGCTCATGACATCCGAATCATG 45908 29 89.7 0 ...............C.......A....C | C [45931] ========== ====== ====== ====== ============================= ====================================== ================== 18 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTATAAAATTTAAACCCCAAAAAATAAAAAAGGCCAGGACCAAAATCCAAGCCTTTTTCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //