Array 1 246507-244829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBH010000004.1 Salmonella enterica subsp. enterica serovar Derby strain HA1-FLR3 YZU1231_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246506 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 246445 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 246383 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 246322 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 246261 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 246200 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 246139 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 246078 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 246017 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 245956 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 245895 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 245834 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 245773 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 245712 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 245651 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 245590 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 245529 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 245468 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 245407 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 245346 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 245285 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 245224 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 245163 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 245102 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 245041 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 244980 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 244919 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 244858 29 93.1 0 A...........T................ | A [244831] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 263968-263147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBH010000004.1 Salmonella enterica subsp. enterica serovar Derby strain HA1-FLR3 YZU1231_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 263967 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 263906 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 263845 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 263784 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 263723 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 263662 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 263601 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 263540 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 263479 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 263418 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 263357 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 263296 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 263235 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 263174 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //