Array 1 109150-115328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCTH010000010.1 Rhodoferax sp. U2-2l contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 109150 37 100.0 34 ..................................... TCGCTGGTCAGCACCCAGTCCCAGACCTTGCGAA 109221 37 100.0 34 ..................................... CTCACCCGCCTTGGCCTTGGCTGAGTTGATGGTT 109292 37 100.0 35 ..................................... ATCCATGCTGCGCGAGACTTTGGGCACCAACGGAA 109364 37 100.0 34 ..................................... GATGTCGGCGTCTTGCCGTCGCGGGCTGCGCGTG 109435 37 100.0 34 ..................................... CATCTTCACGCCAAAGTCCGCTACGGCATAGGCG 109506 37 100.0 36 ..................................... AGGTAGCCCATGGCGGCGTTGATCGCAGCGGTTCGC 109579 37 100.0 33 ..................................... TTCTGCGCGCCCGGTCAGGTATTTGCCGATGTC 109649 37 100.0 36 ..................................... TACTGGTGGTGATTGGACTCACGCAAACATCCGGCC 109722 37 100.0 34 ..................................... TTGATGATGTGGCGTCTAAAGGTGGTTGGCCGTC 109793 37 100.0 34 ..................................... TATCAATCTGTAACGCACTGGCCGCACTGTTTGC 109864 37 100.0 34 ..................................... TATTGATCTACCAATGTTGATTGCAAAAGCAAAA 109935 37 100.0 34 ..................................... AGTCGTTCGCCATCAAGAGCTATCACGGTGGTGG 110006 37 100.0 34 ..................................... AATCAAGAAACGGCCTGTTCTTGATCGGCTCCTG 110077 37 100.0 35 ..................................... GACCAAAATTCTGGGCGTTAATCCGGGGTGATGTA 110149 37 100.0 34 ..................................... AATTCGGATTGTGCGAGGTCCATGCTACCCGCAG 110220 37 100.0 35 ..................................... CGGTCTTTGACCGAAGCCATAGAAACAGAAACCCC 110292 37 100.0 35 ..................................... CTTTGGCGGCTATGGTGTTGCCAATGGAACAGGTA 110364 37 100.0 34 ..................................... AAGAGCTCACCGATGCCATCGCCAGCAAATCAGG 110435 37 100.0 35 ..................................... ATCGTCTGGCACATCATCAAGCGTTTTGCAGCCAA 110507 37 100.0 33 ..................................... ACACCGTAAGCAACAAAAAGATTACGATCTGGA 110577 37 100.0 34 ..................................... CCTCAAACGTCATCCGCTTTGAGCCCCGCACGCG 110648 37 100.0 34 ..................................... TGGCTGACCCATGGATTCAACCGTGCGGCACACG 110719 37 100.0 34 ..................................... GGCAACTGCTGTCGGTGTTTCGATGGGCTTGGAG 110790 37 100.0 34 ..................................... GCTCGATTATGCAAACTGGTCTAGATCGCTTGCG 110861 37 100.0 36 ..................................... CCTCAAACGTCATCCGCTTTGAGCCCCGCACGCGAG 110934 37 100.0 34 ..................................... ATACCAGTGGCGCCCGAGCCAACCAGTGTCACGG 111005 37 100.0 35 ..................................... TGGAGCTCATCGGTAACGCCAAGTTGCCGGGCCGT 111077 37 100.0 34 ..................................... ACGCGCCTGGGGTCGTAAATGATCAACCTGTTGA 111148 37 100.0 34 ..................................... ACCTCAAACAGGGAGACGTCCCACGTATCAGGGA 111219 37 100.0 35 ..................................... AATGCACCGGCACTACAACGTTGACGTCCTGCTTA 111291 37 100.0 35 ..................................... AGCCTCTCGGTGAATGCTCTGGCCTGTTGCGCTTT 111363 37 100.0 33 ..................................... AGTCACGACCCGGACAGTTACCAGCTGTGCCGG 111433 37 100.0 34 ..................................... TGATGGAGTAGCGGCCATGACCGACTACGCTCTC 111504 37 100.0 34 ..................................... TGAGAAAAAGAACTACAGCGGTTGCGATCCAGGC 111575 37 100.0 34 ..................................... ACACCAAGCAGAAACGCAAAATCCCCGGCTTGGT 111646 37 100.0 34 ..................................... GGGATGTGGGGGGAAGGTTTGTAAAGGTTCGGGT 111717 37 100.0 35 ..................................... ATTGCCGGGCCAGTTGCATCAGGAGCAACGCCGAA 111789 37 100.0 34 ..................................... ATCGTTTTTGCTGTCATCGCTGGCGTGATGGCCT 111860 37 100.0 36 ..................................... TGCCTAATACTGATCCGCAGCAGTGGCGCACGCCAG 111933 37 100.0 35 ..................................... GCCAGTAGAAAGGAAAACCGGAGAAAAGAACTGTG 112005 37 100.0 34 ..................................... TTCAGTTGGCTCTCCAGCCACTGAATCGCCTGAG 112076 37 100.0 36 ..................................... TTTTACGATACGTTTATTGATCTTGACGACTGTCGG 112149 37 100.0 34 ..................................... TGATGGAGTAACAGCCTTGACCGACTACGCTCTC 112220 37 100.0 34 ..................................... CCCCAGGTAGTAGCAGTGCAGGTCGTGAAGGGCT 112291 37 100.0 34 ..................................... ATTGATCTTGACGACTGTCATTTTCAGCCAAAAC 112362 37 100.0 34 ..................................... ATCCTGCTTGGTGCGAGAGGGGGCGATTGATGGG 112433 37 100.0 34 ..................................... TCCGCCAGCTGGTTGGTCGGGTGGCTCGCAAGCC 112504 37 100.0 34 ..................................... GTCTATTGATGGTCCAACAAAAATCACGGATCAT 112575 37 100.0 34 ..................................... GGCCTGGGCTATATCGGGGGGTATCTCCAATGAA 112646 37 100.0 34 ..................................... CTCTACGTGTTGTGCCGTATGTATAACCTTGGTG 112717 37 100.0 34 ..................................... AAATTGGCAGCATGGGTAACAAACCCACAAAACG 112788 37 100.0 34 ..................................... CAGGTAGCTGTCTTGCAGTTCCCATACCTGGGGG 112859 37 100.0 34 ..................................... ACTGTGGCCTGCAAAAACGTCATTGAGTGTGGCC 112930 37 100.0 34 ..................................... TTTGAAAATCAGGCAACTTAGCCGCGTTTACTTG 113001 37 100.0 35 ..................................... AAGCCCTTTCGAGTGAAACTCGGAAAAAGGGCGCG 113073 37 100.0 34 ..................................... CACAAATCGTACAGGCGAACGGCGTTCCGCTGAT 113144 37 100.0 35 ..................................... CGTATATTGATGCAGCTTTGTTGATTAATAAATTC 113216 37 100.0 34 ..................................... AGGAGTTTGTCGATTCCGTTGCCGCTAAATCCGG 113287 37 100.0 35 ..................................... CCCTTGAGAGGCAGCAGGCTCAGCCAGGACGCGGG 113359 37 100.0 34 ..................................... GATATGAAACTGCGTACTTATGGCCTGATGGCCG 113430 37 100.0 35 ..................................... CACCCACCAAGCCGGGGCTGTCTCGGTGATCTGGC 113502 37 100.0 33 ..................................... AAAACCGCAGGATTCGCCCGCGTTGTTGTCGGC 113572 37 100.0 34 ..................................... CAACCATCAGCAGAAGGGTGGTGCAAAGAGCTTG 113643 37 100.0 34 ..................................... GGATTTGTGCGGCTGACGGTCCAAAACTACAGCA 113714 37 100.0 34 ..................................... CCCCACCTGAGCGTCGACAAGTTCCTGCGCAAAG 113785 37 100.0 35 ..................................... CTCTTCGCGCCGCTGGCGGCGCCGGGTGGCGCGGC 113857 37 100.0 34 ..................................... AACCGCATAGCCCGGGAGCGGCGCCGTGGTGATT 113928 37 100.0 36 ..................................... TCTCGGGCCTGTTACGTCAGGGTGCCGGACAAGCCT 114001 37 100.0 35 ..................................... CCGGTCCCCCTGGTTTCCAAGGTCGGCGCAACCAA 114073 37 100.0 34 ..................................... GGCTCAGTCCAATATGTATAACACGGCGCAACGG 114144 37 100.0 34 ..................................... TATGCCGTGCTGGCCCGCGCCATCGCGCCGCGCC 114215 37 100.0 34 ..................................... CGTTTTAGTGGTGTTGTTCGTAACGTTTTGCGTG 114286 37 100.0 34 ..................................... CCTTTGACTGGATGGCGCGGCGTGCTGGCACCAA 114357 37 100.0 35 ..................................... ATTGACGGGCCAGACGCTGGAGGTGGCACCCCGAA 114429 37 100.0 35 ..................................... AACACCGTGGGCGCGATGACGCCCGTGTGGGTGGT 114501 37 100.0 35 ..................................... CAATACAGCGATGCTGAACGGCACCTGCCAATCTG 114573 37 100.0 35 ..................................... CCACCTTCGGGGATCAAAAAGGGGACATTTCGGCT 114645 37 100.0 35 ..................................... CCGAGTTGGCGCATAAAGGTGATCCAGTCCGCATC 114717 37 100.0 37 ..................................... CCCAACAGCGCCAACTGTTCCGGGTCGTGACTGAAAG 114791 37 100.0 34 ..................................... GTACAGGTCTTTGATGTACTCGGTCAGCTTCTCG 114862 37 97.3 35 ......T.............................. TTCAGAACCATGCGCGTGCCCACCGAGCCATCAGT 114934 37 97.3 34 ......T.............................. AATATGCCCGCCAGTGGTGCCGTTGCCATCGGTG 115005 37 97.3 35 ......T.............................. GCGTCAGCTTCGAGGCCCTACGCACCGGGCAAGGC 115077 37 97.3 34 ......T.............................. TGCTGTGGCTCAAGGGAGTGACCTTCCCGCCTCT 115148 37 94.6 35 ......T...........A.................. ATCTGGTACGTCGCCGCGATGTGTTATTTCGCTGG 115220 37 94.6 35 ......T.........................T.... GACAAGGACATACTGCTTTTGGACCGGGCGATCAA 115292 37 73.0 0 .T...TTT......T......A.A.ACC......... | ========== ====== ====== ====== ===================================== ===================================== ================== 87 37 99.4 34 GGTTCGCCCGCCAGCAATGGCGGGCGTGGATTGAAAC # Left flank : GTTACGACGTGAGCACCGAAACCAAGGCCGGCCGCCGCCGTTTGCGCCGCGTGGCGCGGGTGTGTGAGAGCACCGGGCAGCGGGTGCAAAAGTCGGTGTTTGAGTGCCAACTGGACGTGGCCAGGTTTGAAACCCTGGAGCGCGAGCTGCTGGCCGAAATCGATCCCAGCATGGACTGCCTGCGGCTGTACCGCATTCCCGGCACACGCGGTTTTGAGGTGATCGAACACGGCACCTTCAAGGCCGTGGATTTTGACGGGCCGCTGGTGCTTTAAGCGCCGTTCACCAGGGCCCATGCCAGTTTTGCCATGGTATGGTTACCTCCGCGAACCCCAAGTGATGGCTTTGTCACCCAGAGGTTCGCGCCCTTTGCAATTCTTTGTTTTGAATGGTTTTTTGATTTTTTTGAGGTTGAATTTTTTGCAGACACATGTCGTCATCGCCAGGTCCGCGGAAATGCACGAAAAAATCGTTGACCAGTAAGGCGTTGGATGCGCGGA # Right flank : CAATTCAACCCTCTATGCCCTGATGTCAAGCGCATCTTGCAGGGTGTGCCTCAGACGCTGGATACGAACCTGCGGTTGAGCTCGCATCCAGCCAGTGCTTCAGGTGCCCAGCCGCCTTGCCTGAGCATCCCGCCGCTCCACCACCTTCAACCCCAGCAGCAACCCCGTCCCCAGCGCCATCACGCCGGCGGCAAAGTACAGTCCGGCGTTGTAGCTGCCCAATCTGGCGGCCACCAGGCCGGTGATGGCCGGGCCGATGATCTGCGCCACGCCGTAGCTCAGCGTCATCTTGCCCATCATCTTGGCCGGTTTTGTGGGGTAATAGCGCCCGGCCATGCTCAGCACCAGGCTGACCATGCCGATGAAGGTGCCGCCAAACAGCAGCGCGCCACACAGCGTCGGGATCAGCCCGCCCACCAGTACCGGCAGCAGGATGCCGACAATTTGCAGCACCGCCGCCAGGATCAGGGCATTCAGGTCGCCGGTGCGCCGGGCGATCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCGCCCGCCAGCAATGGCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.20,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //