Array 1 42893-44202 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEB01000015.1 Escherichia coli strain MOD1-EC6045 MOD1-EC6045_15_length_133903_cov_49.239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42893 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 42954 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 43015 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 43076 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 43137 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 43198 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 43259 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 43320 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 43381 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 43442 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 43503 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 43564 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 43625 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 43686 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 43747 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 43808 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 43869 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 43930 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 43991 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 44052 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 44113 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44174 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69905-71276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEB01000015.1 Escherichia coli strain MOD1-EC6045 MOD1-EC6045_15_length_133903_cov_49.239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69905 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 69966 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 70027 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 70088 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 70149 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 70210 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 70271 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 70332 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 70393 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 70454 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 70515 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 70576 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 70637 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 70699 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 70760 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 70821 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 70882 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 70943 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 71004 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 71065 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 71126 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 71187 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 71248 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //