Array 1 1516-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000090.1 Paenibacillus sp. IB182496 Contig_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1515 33 100.0 34 ................................. GACAGTTACTCTGACGCTTATACGGTCAATCTAG 1448 33 100.0 32 ................................. AGGCAGAACTCCAAATATATCTACTCCATTAG 1383 33 97.0 33 A................................ ATATAACCCCAGTCAACCCCGGCCACTACTTTC 1317 33 100.0 32 ................................. ATTGTCGGTACACACATTTTTAATTGCGAACG 1252 33 97.0 33 A................................ CCTCCAGCGCGTCCACTTCCACAAATTCGGCGG 1186 33 100.0 33 ................................. ATAACGCGGAATATGATGCGGCCATCCTGCGCA 1120 33 97.0 33 A................................ TTGTGTTCTCTCTGTTGTCTTGTGCGAACTGGA 1054 33 100.0 33 ................................. AACGCCGCCGCCGTTGGCGACAAAGGCCACGCG 988 33 97.0 32 G................................ ATCGACGGAGTGAAGGTGGAGGCGCTGCCTGA 923 33 97.0 33 A................................ TTTTGTTCCTTATCATCCCTAGCCCTTAGAATC 857 33 97.0 33 .............A................... CCACATGCGCCCATTTTTGCGAGGTCGCCTACC 791 33 97.0 34 G................................ CTTCTATGGCATCTGCCCATCTATCAATAGTGCT 724 33 100.0 33 ................................. CTGGAGCGAAAGAACGACGGCGAGCAGCGGTCA 658 33 97.0 33 A................................ TCGTTCCCGAGCTGCTTTAACGCTTCAAGTGCT 592 33 97.0 33 A................................ GTCTCGCTGTTGGTCTGGATCGTGCAAGCAAGG 526 33 97.0 32 A................................ GGCACTAAATACCCAGAATTAAGGTATTTTTC 461 33 100.0 32 ................................. TTGTAACTACGCTCGTTGTTCGGTATCACGTC 396 33 84.8 0 C.....................A.A.....C.G | ========== ====== ====== ====== ================================= ================================== ================== 18 33 97.5 33 TGTCGCATCCCTCGCGGATGCGTGGATTGAAAC # Left flank : CGCAGCTGCGCATCGAGCGCGCCAAGCGGCTCCTGCTCATGCACGGCGCGCCGGTAAAGGAGGTGTCCGCCGCCGTCGGCTTCGGCGACGAATTTTACTTCAGCCGCATCTTCCGCCGCCTCGTCGGCGTCGCGCCGTCGCACTACGGCAAGCGCAGCAAGGGGGGAATTGAAGGGAGTTAGGCGTTTGGCGGGGGCCTCGCCCCTGCAAAGCATGCAACCTGGGTATTGGCGAGGGTCATGCTGAGTCGCCCGTTGCGCGAACTGTACTTTTCGACTGAATCGGCAAGGCTTCGGGCGGGAGAGGCGTTTCCGTCCAGGTTGCATTACTCGTGGTGCGAACCTCAGGTGCACATGAAATCCCCGGGAGGTTCGCACCCCGCGCCAGGACTGAGTTTTTAATTAGAGACTCGTGTTTTTGGACCAATAAATGTATACTAAAAATAGGTTCGCACTTTTGCGCCCGGGAGCCCTTGCCGAGTAAGGGCTCCCGGGCGCCGC # Right flank : GTCTGGGGATTGTGCTCTCCATCTTCAGGCACCGGCGGAATGCGCTCCGTGCATTCGTCCACACCTCCGCCGCCCCGTGGGCTAACGGACGCTGCCAGGCTAACGGTTGCGAGCGTACTTATTTCGATCCATTTCAGGCGATTTGCAGGCTAACGGTTCCCACGGCGCTTAATTGGCTCCAATCGCGCGTTTTCGATCGATTTTACGGAAATAAGACCTGTGGCAACCGTTACAATTTGATCGGCGCTTTTTTTGGCTAAATAGCCGCTGTCGCAACCGTCCCTCGTATTTAAGAGGGTTGCTCACGAATGCTCACGCATTCGCAGGATTTCGAGATTTTGCACAAGTCGCACCTTGGCGGCGT # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGCATCCCTCGCGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 139234-138407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000013.1 Paenibacillus sp. IB182496 Contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 139233 32 100.0 36 ................................ CTTTTTAGGAACAGTAATCTCAAAAAAAAAGTGGAA 139165 32 100.0 34 ................................ CTCCCAGGTCAGATACTCCGGGCGCCATGCCGTG 139099 32 100.0 34 ................................ ATTAGGCCGCCCGTCATCGCCTCGCCTGCGCCAC 139033 32 100.0 35 ................................ CGTATCTCGTATCGATCGCCTCGACTGTTGCAATC 138966 32 100.0 33 ................................ AGATTCGAACGTTTTAATCGACTGGAAAGACTA 138901 32 100.0 34 ................................ TTCGAGGTCATAGCCTTGATTCTGGCGCTCCTGA 138835 32 100.0 35 ................................ AGAACGTACAACTTAATGGCACGTTTGTCTTTGGT 138768 32 100.0 33 ................................ GTGCCTGTTACGCTGTCAATAGATGCGATTCGC 138703 32 100.0 33 ................................ CACGCATCGATCCTTGGCGCGGGTACCCCCAAC 138638 32 100.0 35 ................................ ATCCCGCTGGAGCTGGCAGAGCTGGCCGCAGGGGC 138571 32 100.0 33 ................................ TCAGCTAGTGCGCCGCCCGACAGGTTATTCATG 138506 32 96.9 35 ...............................G CATCATGTATGAGAAAGTTCATAATGCGTCTACCG 138439 32 96.9 0 ..............................C. | G [138415] ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.5 34 GTCGCATCCTATGTGGATGCGTGGATTGAAAC # Left flank : GAAGAGCCGTCCGGCGTCTCGTGGACCGGTCTGCAGTCGATCACGGGGCCGGATGAAGGCTATCTGCTTGTCTTCCGCGAGCTGACGGATCGGGCGGAGGGTCGCTTGCGGCTATGGCAGACGGACGGCGCGCCGCTGGCGCTGCGCTGCGTCGCCCGGCTCGAGGCGCGCGAGAGACTTGTGGACGGGGCCGGTGAACCGCCGCTGCGAGCGGAGGCGGACAGTGACGGGCGGTATGCGTTTGTTTTGCCCGGTCCGTTGACATGCGCGCTGTATCGGTATGGGACGGAGGCGCAGGAACTGCTGACGTGACGGCACGGCTGCGCCTTCCGGTGCGAACCCCAGGTGCACATGGAATCCCCGGGAGGTTCGCACCCCGCGCCAGCACTGGCTTTTTTTACAGAAGGCTCGTTTTTTTAGCCTGAAAAATGTATACTGAAAATAGGTTCGCACTTTCGGGCCTGGGAACGCCCGCCCCGTATGGGCTCGCGGGCGCCGCT # Right flank : GAATCGCTCGTTGTAAATTTAAGGTCGAAAAATGCGTGACACATGCAGTATAATAGAACCATTACAGTAATGTCGGAGTGGACGCGCCAGCGGCCGGTATTCGGGGAGGTCAAGCATACTTGAGCGAGTCGGTTGAATTTGTGACATCGTATGAAGGGGAAGAATTCAAGGCATTCAAACGGTTTCAGGTCTTTCGAAGGCATCGGGTGCTGGTACGGATGTTTATTTTTGTGCTCATTGCGGCAGGCTTGTACATGGGGATTCGCCGCGCCGATTGGTTGACCGGCGTTCTGCTGATCGGCATCGGCTTGTTCACGCCGATGGCGCTGGGATGGGTGACCAACTGGATGGCCAAGCGGCAGAGCAAGCGGCTGCGGAAGCAAGGCGGCATCACGTGTACGTATCGCGTGGAGCGGGACTGGCTGTTCAACGAGACCGACTTCGAAGGCGTGAAGACGACCTCTGCGACAGGCTGGGGGAATGTGGTTTACGTTTACGAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32944-31275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000032.1 Paenibacillus sp. IB182496 Contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 32943 32 100.0 33 ................................ CAGGACGACGTATTCTTTGTGGAGGATGTACGG 32878 32 100.0 34 ................................ ACCCAAGCCGGGTACGAGCGCTCTAAGCTGAGTA 32812 32 100.0 33 ................................ AGCAATGGCGTTTTGGTCAATTCGTTTTGACTG 32747 32 100.0 33 ................................ ACCCGCACGATGGTCGATTTGGGAGTGGCGACG 32682 32 100.0 33 ................................ CCGTGGAACCAGTACGACGTGCACTACATCGAC 32617 32 100.0 32 ................................ ACCCTCGCCATCCAGGCGGGCGGAGAGCGGAA 32553 32 100.0 35 ................................ ATTGTCCACGCCTACGAGTACGAGGGCGAGCGGCA 32486 32 100.0 34 ................................ TCCAGCACGTTGCGGTCATACGCACGATCGGACT 32420 32 100.0 34 ................................ TTGGTTGTCATATCGGCATCACCCGCTTTATTTT 32354 32 100.0 33 ................................ ATCATCCACAAAAATCATACCTTTTTCCGGAAC 32289 32 100.0 33 ................................ GTGGCGTTTGTAGTCTGCATAGTCTCGAGCCAT 32224 32 100.0 33 ................................ GCTTCCTCGGCGTTTTTGACCGGATCGTCAATG 32159 32 100.0 33 ................................ ATTTATTGGCTACGCGGCATGGATTACGACGAG 32094 32 100.0 34 ................................ CGCGCGGCTGTCGAAGGTGATACCGTCTACTTTG 32028 32 100.0 34 ................................ GCCAAGGTCATGTGTGTTTTTGTTGGTGTTGTCA 31962 32 100.0 35 ................................ AGTTAAATATTGGTATAAGTCAAGGATCTCTTTAT 31895 32 100.0 34 ................................ GACAACAGCGTTGTGTCTCGCGGTAAGGCAAAAT 31829 32 100.0 34 ................................ AGCGGCCATATATGCCGCTAATTGCTCAGTGGTC 31763 32 100.0 34 ................................ ACTCGAATCGTCACGGCCCAGACCCGATTGGACA 31697 32 100.0 33 ................................ AGATTCACGGTTTAATCGCTCAATTACTTCTTT 31632 32 100.0 33 ................................ TCCCACACACCCTCACTGTTTTTAGTGAAGGAG 31567 32 100.0 34 ................................ ATGCTCGCTTACAAAAGTTGTTTTGGGCGAACCA 31501 32 100.0 33 ................................ GTGATACCCAATGCCATAAAGCTGCCGACAACG 31436 32 96.9 34 ...........C.................... TTTCGTAACAATAATCGGTTTCGTAGTCATACGT 31370 32 100.0 32 ................................ AGCGTGCCGTCCTCCGCGTAGAAGCCGGCGTC 31306 32 93.8 0 .......................TG....... | ========== ====== ====== ====== ================================ =================================== ================== 26 32 99.6 34 GTCGCATCCTATATGGATGCGTGGATTGAAAC # Left flank : GGTAGCGACATACCTGCAGTGCGGATGCAATACCAAGGAGACGGCGGAGCGTCTGTTCCTTCATTATAATACGGTGACATACCGGCTGGAGCGCCTGCGCAGCGAGCTCGGCTGGCAGCTCGACGATCCCGAGACGCGCCTGCAGCTGCAGCTCGCGATCAAGCTCCACGAGATGGAGTCGGACAGCGGCGGCGGGCGGTAGTTGGTTGCGGAGTGGGTTGGATTGGGCAAGGGAGCGGCTGTACTGGAAGGGTAGGCCGTGTGAATTAGCCTATGGCAAATGTTGCAGTGTGTGAGCGCCAATGGGATGTCGGCTACTCGGTTCGATGCTGGTGCGAACCTCAGGTGCACATGAAATCCCTGGGAGGTTCGCACCCCGCGCCAGTACTGGCTTTTTTGAAGAAAGGGTCGATTTTGCAGGCTAAACATCGTATACTAAAAAGGGGTTCGCACTTTGGGGCCCGAAAACGCCCGCCCCGTAAGGGTTTCCGGGCGCCGCT # Right flank : GCGACTCATTGAGGAATCACAATCGTGCCCCTGAATGGAATTGTGAAGGCTGAATTTATAAAGGGTTGAAATTATACTGCAAGTTTGCTATGGGGAAGGGTGGAGCAAGTTGTCTAGCGGCAACTTGCTCAGCAGACTCTTTGGGCTTTTGGCTATCTGGACCAAGCCTCCCTTACTTCGTCGAGTTCGTTATTCGCAGCAATGCGCAGCCAGCGCTTCAATTTGCGAAGTTAAATGAATCGAACGACTGTTCCGTAGGCGAAGATTTCAATTACTTGCTTGGTCCCCATCATCCCGCTGGCTTGGGCGACACGGTATTCAAATTGACAGCTGATCACGGCATGACCTCCAAGTTGCGCCGCTCTTTGTTTTAGCTGATTTTTGACCCCCTCGAAAGCTAAATTGGGATCAGCGCTCTTGAACACTCCCTCTTTGTGAGAGTCAATGGCAAATATAGTATCGATGACTTCGCAGTGCACGTTCAAGTTTCCTGTGGTGAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATATGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 45872-46231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000032.1 Paenibacillus sp. IB182496 Contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 45872 32 100.0 34 ................................ TACGAGTGGATCTTTCCAGATCGTGACGCGGGAG 45938 32 100.0 33 ................................ TTGCCCGTGGTCGGGCTCAGCGTACAGTACCGT 46003 32 100.0 34 ................................ GCCTCGAGATCGTCGTATGTCTCGCGGAACAGGT 46069 32 100.0 33 ................................ GACGGCGTGGTGTTGGATGAGTCATCGATCCTC 46134 32 100.0 34 ................................ CCTTTTTCGCCCAGCCAATTAACAAGCGTCCGCC 46200 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 6 32 100.0 34 GTCGCATCCTATATGGATGCGTGGATTGAAAC # Left flank : TGTTTCGGCTTTGCCAGTGTACGGATCGACTATATTAAGTAGAGCCCTTCACTAATGAGCACCAAGTCAATGTGAGGTTATTTGACTAATTTTCTGATACGTCAAATTATATAACATGGTTTTTCGGAAGTCGTTAGCAATTAATAACAGAATAACGGATGATTTATTGTGACTTAGTCACAAAACGACCTCGTAACTGACATTGAATTAACGCAAAGTGCGTTGTCCTTTATTGGTGAACTGAATCAAAGAAGGGAAGGACGGTCAGAGGAACTGAAGGGTGCTGAGACAATGAGAATACAGCGCCCATTGAGGAGAAGGCGGGGCGCATGGTGCGAACCTGAGGTGCACATGAAAACCCCGGGAGGTTCGCACCCCGCGCCAGCACTGGTTTTTTTGAAGAAAGGGTCGATTTTGAAGGCCGAACATCGTATACTAAAAAGGGGTTCGCACTTTCGGGCCCGAAAACGCCCGCCCCGCAAGGGCTCGGGGGCGCCGCT # Right flank : CCTATTCGGCGCTAAGGATCCTTCACGAAATAACCAATGACAGCTCATCCATCAGGCGGGCAAACGAACTCACCTCACCTCAGCTAACGGTTGCCAGCGCGCTTATTTCGATGGATTTCAGGCGATTTCCAGGCTAGCGGTTGCCACAGCGCTTATTTGGCCTCAATCGCGTTTTTTCGATGGATTTCAAGAAAATAAGACCTGTGGCAACCGTTACAATGCAATCGGCGTTTTTTTGGGCGCAATAGCCGCTGTGGCAACCGTTAGGTTCGTTGGCCGATGGTGAAGGGATGAGGACGGTTTCAATCGCACCAGGTTATTCTGTCATGGACACTAAGCCTGGTGTATCCGCCGCCGGTCGCATCCTATTATGGATGTATGCAGTTGGCGGCATTGATTTCGGATCAAATGATCGCCGTGAATTACAAACGAAACATCTCCTGCCCCTGCAAAAAAAAGGAGCCCTCACGGCATAGTCCGCAAAAACATTGCGGGCTAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATATGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3630-5443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000055.1 Paenibacillus sp. IB182496 Contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3630 33 97.0 35 T................................ CCGTTGTACTCGTCCTGCATGTCCCATATATCCCA 3698 33 97.0 32 T................................ TGGCGATCGATGTTCAGCCCGTTGCGCCGGCA 3763 33 100.0 33 ................................. GCGACTACTCCACCTGTTGGGGGCACGACGAAT 3829 33 97.0 33 A................................ TTCCGTCCCCCGATTGCCGCGCCCGCAATGGCG 3895 33 97.0 33 C................................ AGAGCGGCGACGACGGCATTAAGCAGCGTTGCG 3961 33 97.0 33 A................................ TGGTGGCGCATTACGAGACGTCCGAAACCATCT 4027 33 93.9 33 C...........................A.... CATTTGGTGCAAAGCACCTTCCGTTCCTGCAAA 4093 33 93.9 33 T............A................... CTGCATAAAGTCGTCTGGACGAATGGACACGCC 4159 33 100.0 33 ................................. GATTTTTTGGCGCATGTTATGCGCGCTTGTGCA 4225 33 100.0 34 ................................. ATCCACTCGTTCACGGTTTTCGTCAGACGCTCGG 4292 33 97.0 33 T................................ TGGCCGGAACCTCGAAGTATAACGCGCCGGCCG 4358 33 97.0 33 T................................ ATATATTGATCCCATGTATAATTGGAATCTTCT 4424 33 97.0 33 T................................ TTAATGGTGTAAGCTGGAATAAAAATCTTTACA 4490 33 97.0 33 A................................ TCCATGATGCTCCGGAATTCGTCACCCTGCAGT 4556 33 97.0 33 C................................ TACAAATTTATTCTGCGACAACTTGATGACGTA 4622 33 100.0 32 ................................. AGATATGACCGATCGCTTGTTTGCCTCCGTTT 4687 33 100.0 32 ................................. ATGAATAAATATACAGTATTTTTGAATATGTA 4752 33 97.0 33 A................................ TAGTAAACGAATCGACCAGCTGCAGCCGCACTT 4818 33 97.0 32 A................................ ACTCGTGATAATCCGTGACATCGTACCGGACT 4883 33 97.0 32 A................................ TTGAAGTAGTTTTAATGTATGCTCCACAAACT 4948 33 100.0 32 ................................. ATTAAAAGTTCTTCAAAAATAGCGCGACTATT 5013 33 97.0 34 A................................ AGGACGGGTCTGCGAAGACGGCCGACGCGCTCGC 5080 33 97.0 34 C................................ ACGTCGCTCACGTGGGCGACGTTGGGAAATAGGT 5147 33 97.0 34 T................................ ATCCGGGCGACGTCCTCGGCCGCCCGGAGCGCCA 5214 33 100.0 32 ................................. CTGGAGATCCAGACAATCACAGCGGCGGCATT 5279 33 100.0 33 ................................. ACCTTCGTTTCATGTCGCCGGATCTTGTGGATC 5345 33 97.0 33 A................................ GGCGCACATGGCCATCGGCCACTCGTCACGATC 5411 33 90.9 0 C.....................C........G. | ========== ====== ====== ====== ================================= =================================== ================== 28 33 97.4 33 GGTCGCATCCCTCGCGGATGCGTGGATTGAAAC # Left flank : GCATCTTGACTGGCCGCAGAAATGAGCATCCCCGGTTGACGAGCCAGGGTGTTCATCGTTCGGATAAACCGCTTGACCAAATGTCCCGAGGCGAGCGGGATGCGTTGGAAAAAGGAATAATCTGGTGTTGCCATAGAAGGATGTGAGGTATACATGTGGTCCGATCCCTGCCTTATCTCATAGTCCTTCCATCATAGGGGTTTCATCTGGAGTTGGGTACCCCTATTTCAATCATTCATTTACTGGAATCGTTCTGGGTCAAGCATAGACAAAGATGTCCATTACACAAGGATACTGCAAAGAGGCTTATCGTGACGAAAGAAAGGGCGACTGGTGCGAACCCCAGGTGCACATGAAATCCCTGGGAGGTTCGCACCCCGCGCCGGGACTGGCTTTTTTGCGAATGGACTCGTTTTTTTAGCCCCAAAAATGTATACTAAAAACAGGTTCGCACTTTTGACCCCGGAATCCCTTGCCCCATATGGGCTCGCGGGCGCCGC # Right flank : CGGGAACAGCGCTGAGCGCATAGTAATTAGGTAGCCTTATCTTTATCTTGATTTTATTATTTCCTTAATATAGTAATTTACTATTACATACGTTAATCTGAAGCGATGTCTGACTAAAGGGGAGAAGTTTGGGGTGAGAAGATTTAAGACTGTTCTCTTTTTCAATTTATTTCTGATTGTTGCCGTTGTGATGTCGGTTATGCCTATGAACGTCGCTGCCGCTGTGCCTGACGGCACACAAAATTTGGGCGGCTCCTGGTTGAGTGACAATTCCAATGGATTTGTTGTAACTGACATTACACACGGATCTATGAGTCAATACCCGAATGGCATTTATATGAACAGCGGTAGCATAGGCCCTCAGAGCTTCAAAATTATGACGGGCGAGGATTTTGTCGGAGGGACGTTTAATCTTACGAGTTTGAACTTTAACACATTTACATCGATTCAAATCTTTGATATTACCTTATATGGACTGGATGAAACCGGGGCTAGAGAGC # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCATCCCTCGCGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18295-19911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000055.1 Paenibacillus sp. IB182496 Contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18295 32 100.0 34 ................................ CCCGGCCCGATGTGGGCCACGCAAGCCGGGCGCA 18361 32 100.0 36 ................................ TTTTATTTTTGCGCATTGTGATTGACGGGTGCGCGG 18429 32 100.0 35 ................................ AAGAGGAGAAAAAGCGGTTGTCGCTCCCAACTCTC 18496 32 100.0 34 ................................ AAACATACTTCGGGTGTGTGTTGCTGCTGGACGA 18562 32 100.0 34 ................................ TTTTCTTATGATCTTAGTAGTTTCAGCAGCTTCA 18628 32 100.0 34 ................................ TTGTGTCCACGGTAGTCAGGCTTGACGTCGAACA 18694 32 100.0 34 ................................ CAATCGCTCTAACGCCCTTGCGGAGCCGTATCCC 18760 32 100.0 34 ................................ ACTCCCACTCCCTACCATATACATTGCGTATCAT 18826 32 100.0 34 ................................ ATCGTCCAACAAAAGGGAAGATTAAAACGTGTAC 18892 32 100.0 34 ................................ TGAGCCGGTCCCAAAGCTGAATTCAGCCCGAGGC 18958 32 100.0 33 ................................ TGCGATCTGCTCACCGAAACGACGTTTCCGGCC 19023 32 100.0 34 ................................ GCTGATAGTCTCGGTGTGCTGTAGCACGCCGTAG 19089 32 100.0 35 ................................ CGGCTATCGGCGGACTATCCCGCGCAATCGTTCGC 19156 32 100.0 34 ................................ TAATTGATTGGGCCGAATCGATGAATGCTTGTAT 19222 32 100.0 33 ................................ GATAATTGCATCTGCTGTAGTATTTGCGGTCCT 19287 32 100.0 33 ................................ TGCCTGCGGCAGTCTGCCATAGTCGTGCAATAA 19352 32 100.0 33 ................................ AAGCAGCACTTGCGGGCAATCCGAACCGATCGG 19417 32 100.0 35 ................................ AGTTTGCATGTATGTCTCCCCCTTACGTCATCTGC 19484 32 100.0 34 ................................ TGATTTACCAAAATCAATCGCATCTCCATGAATA 19550 32 100.0 34 ................................ CGGCCGCCCACAAAGTCGCGCTCACGTCCGGCAA 19616 32 100.0 34 ................................ CAGGGCGCTACCGTCTTAATCTGGACGCTCGAAA 19682 32 100.0 34 ................................ GATATCATCGCGAAGACTGATCGGCCGGGCAGCG 19748 32 100.0 34 ................................ ATCGAGGCTGAAAAGACAGAGGACACGTTTCAGA 19814 32 100.0 34 ................................ TGGCTGCTGGTTCCGGCGCCGATCGCCGTCCGTG 19880 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 100.0 34 GTCGCATCCCGCTGGGATGCGTGGATTGAAAC # Left flank : CCTTCTATCAGGAGACGTGCGACGCGGTGCCGCACCGCGCGAATCGACGGATGTAGGGTTTGGAATGCGGCTGAGCTTGATTGGTGACGATTTGAGTTGCATGTAAGTTCCTGAGACAGCAAGCTATAGCTGGCGCGGATAGCTCCGTTGTTCGTGGCCGATCATCCAGCCGATGATAGATCGAGCAGGCCGCGCTGTTTATTCGCTACAGTGTTCTCGAGTATGAGTCGGGGGGCTCACTAGCGAAAGTCTGCTCGAACGGACAATAATGTTTGTTACTCATGCATGGCTGCGGTGAGGGATGCTCATCATGACGACAGGAAGGACGACCGGTGCGAACCCCAGGTGCACATGAAATCCCTGGGAGGTTCGCACCCCGCGTCAACACTGGCTTTTTTGAAAACAGACTCGTTTTTTTATCCTGAAAAATGTATACTAAAAATAGGTTCGCACTTTTGAGCCCGGGAGCCCTTGCCCTGTAAGGGCTCCCGGGCGCCGCT # Right flank : CTCGACATCATGTGAGCGGTCGCCGCGGATCTCTCCGTCGCATCCCACTGGCCGGAATGCCGGTTGGGGCGTCTCTCTCTCTCAATCCATACGGAAATGAAAAAAACGTGTTATAATACGGCTATATTTTAAAAGCAGGGCTGTCGGGTTCCCGCAAATGTGCGGATTAACCTCTACTACATCTTCACACGACAAGGAAAGTGAAGGCTTAATGAACATTACAATTGAAGACATCAAAGAGATGTGCGGCTCAACCTCTTATTCGCGCGGCAGGCAGTACCAGCAGGCCGGGCGGGTCAAGCTTCTGCCGTTTAATGCGAGAGAGCAGGCCTTCAAAGCGGCGGTAAGAGGCAGTCGGACCTATACCGTCGCGGTCTGGGTAGAGGATAACGAAGTGCGCGAGGTGGAGTGTAATTGTCCAGCATTCAGCAACCACTATTATTGCTGCAAGCATGTGGCGGCTGTTCTGCTGGAGATGCGACAAGCGACTCGGCAAGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCTGGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 23762-26397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000055.1 Paenibacillus sp. IB182496 Contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================== ================== 23762 32 100.0 36 ................................ TTGATCTCCTTTTTGCTCTCCGTCACCTTCAAGATG 23830 32 100.0 33 ................................ CTCCGGGCAGCCGGGATCATTTGCAGCGCCCGG 23895 32 100.0 35 ................................ TACAACAGTCCAGTGCATTTTCCAACACTCCCTCA 23962 32 100.0 34 ................................ TTTCATGGATTGAAAAGTGCTTGTCGAAATGGTC 24028 32 100.0 34 ................................ TGTCGACATCGGGGCGATCACGTTGTATGCAAGC 24094 32 100.0 34 ................................ ATTGATAAATCAATCATCATGACAAGGTTTGTTG 24160 32 100.0 33 ................................ CAACCGTCCGAATACGACCGGATATAACCTTTT 24225 32 100.0 34 ................................ TTCTGCGCGGGAGTCATTTCCACGTACACAGGCT 24291 32 100.0 34 ................................ CGCTTAATCTCCCGGCAGCAGGCGGACATCAAGC 24357 32 100.0 33 ................................ AGCAAGGGCTTGCGCGATCTCGTAGCGAGTGGT 24422 32 100.0 34 ................................ GTCGTTGATGGGCACAAGCGTACCGTAGTCGCAC 24488 32 100.0 35 ................................ TTCGATCACTGGGCCGAACATGTCCGCAATCTCCA 24555 32 100.0 35 ................................ CATTTTGTAAATGTAGATAGAAAGAACGTGAATAA 24622 32 100.0 33 ................................ CTTCGCGGCTACGGTCCAGCTGCTTCGCAGCCT 24687 32 100.0 33 ................................ GTAATTTCGTAATCGACCGCAAACGAATCGATA 24752 32 100.0 34 ................................ GTTCCTCCTTTGGTATAAGAAAGGAGCAGCCCGA 24818 32 100.0 34 ................................ ATCCCTCGCCGGTGAATTTCTCGCCCGCAAACAG 24884 32 100.0 34 ................................ CGGATTCCGGGCCGGCCAGCGTAGTCCGTAATGA 24950 32 100.0 34 ................................ TTCGAGGAGGAGGGGGGCGAGGTGGGCGCAGGTC 25016 32 100.0 34 ................................ GGACCTCGGCACAGGAAATAAGTCGCAAAGTTCC 25082 32 100.0 33 ................................ CTCGCAGAATACCGGTCTAGGGCGGCGGGCCAA 25147 32 100.0 35 ................................ TTCGCGGCGGTTAATTTTTATTCGCTTCAAGCCTC 25214 32 100.0 33 ................................ CGCAACATCCTCCGTTTCTTCGACAGTTACCGT 25279 32 100.0 34 ................................ AGAGAAGCCGAGCTTAAAGATGCCATGGACGATC 25345 32 100.0 34 ................................ TTGCTGCGCTGTCGGAGAACGACCTGACAGGCCC 25411 32 100.0 35 ................................ TTCTTCTGCTGCTATATGAACGGCAGCTTTAGAAG 25478 32 100.0 34 ................................ CGCGGTGTCCTTGAGGTAGTCTTGCTCCAAGCGC 25544 32 100.0 33 ................................ TTCATATACGGTTTCTCCGATATCGTCCAGCAC 25609 32 100.0 33 ................................ AATGCGAATTGCAGCATGTCTAGTCAATATGTA 25674 32 100.0 34 ................................ GTAAATTCGCCGACGGACATATCCGCCATGACCT 25740 32 100.0 33 ................................ GCGTTAAAATCGAGTCGGTGACGCCGTTTGACG 25805 32 100.0 34 ................................ GTCCAGGTTCGGCACCGGCTCGCCTGCTGATAGG 25871 32 100.0 34 ................................ GAGATCACGATCAAGGTGAGCGGCGCGCCCGTCC 25937 32 100.0 33 ................................ ACTTCTACGGGCACGGTATGGACATGCGGCCCG 26002 32 100.0 34 ................................ ACGATAAGTATCCCCATTACAGATGAAAACAGAT 26068 32 100.0 34 ................................ CGCTTCAATCTCCGACAATTTGTTCTGAATTGAT 26134 32 100.0 34 ................................ CGCTGAATCATCAGCTGCTTGAGTGGCATTATTT 26200 32 100.0 35 ................................ TAAGTGTCCGAGGGCAGCGGCAAACGCGAAGAAAA 26267 32 90.6 66 ............................C.GT CAGTAGTTTTGCTACAATGGAAACGTGGATTAAAACACACATCCAAATTCCAAAAAATGGGTCGTA 26365 32 75.0 0 ..........T.GC..........C.A.GCC. | C [26388] ========== ====== ====== ====== ================================ ================================================================== ================== 40 32 99.1 35 GTCGCATCCCGCTGGGATGCGTGGATTGAAAC # Left flank : GGATACGGTCATCCTCTACGATCTGTGGTGGAACCCGGCTGTCGAGCAGCAGGCGGCCGACCGTGCCCATCGGATCGGGCAGCAGCAGGTGGTGCAGGTGTTCCGCTTCGTGACAGAGGGCACGATCGAGGAGAAGATGTACGAGCTGCAGCAGCGCAAGAAGGATCTGGTCGACACGGTCGTCACGGCCGGGGAGCAGGGCACGTCGAGCTTGTCGGAAGCAGATATTCGTGAGCTGTTGAGTCTGTAAGCTGACGATTGCGGGCACCTGCGTCGAGCGTTGCAGGTGTTGTGCTGCGGCAGCGAGCCGCCCGGGGCTGGTGGTCGGTGTGGTGCGAACCCCAGGTGCACATGAAATCCCCGGGAGGTTCGCACCCCGCGCCAGCACTGGATTTTTTGGGGAAGGGGTCGTTTTTTTATCCTAAAAAATGTATACTGAAATCAGGTTCGCACTTTCGGGCCCGGGAGCCCTTACGGGGCAAGGGCTCCCGGGCGCCGCT # Right flank : CCCTGCATAGGGAGGGGTCGAATTGATCACAGGAAGCAAGAAGTGGCTAAACCTAAGTCCATCTGATCGATTTATAGTAGAGGAATTTGTGCATAGAGTGAGTGGGGAACCTTTAGTAAGGCGTATCATCTTGTTCGGGTCCAAAGCCAGGGGAGAATCTACAAGAGATAGCGATTTTGATTTTGTCGTGCTAGGTGACTTCACCGATCCCTCGTGGCCCAATCGAATGTCTGATTTGAAGGCGCGATTAGGAAATTTGAGAACTGTAGGGATAGACTTACTGCCGCTCACGGAGTGGGAGTTAGACAACAAGTTCTTCTTTAGAGACGCTGTTTATCAGGAGGGAATTGTTGTTTATGAAAAATAACGACTGTCTGGAATGGTTTAATAAAAGTAAGGGCGACTGGAGATCAGCTGAGGTGTTAAAAGCATCTGGTGAATTTGATACCTCTTGTTATCATTACCATCAATCAGCATTTACGCATGATTTGGAGCTTGGA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCTGGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 36422-37673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000055.1 Paenibacillus sp. IB182496 Contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================================================================================== ================== 36422 32 100.0 33 ................................ AAGCCCTCCCGATCGCCTTGTGATCGATCTTGC 36487 32 100.0 33 ................................ CGTCAACAGCAGCTCCGCATCGGGGCGGTGCGG 36552 32 100.0 36 ................................ GCCATCGCCCGGTATCACCGTCAATCCTGACGGCGC 36620 32 100.0 34 ................................ GCGGCGCTTGGTACGGCGGCTAATGCCTCTTTGA 36686 32 100.0 35 ................................ CACATGTTGGGTAAAAAATAATGACGGAATTATCA 36753 32 100.0 34 ................................ CTGATATTACAATTAGAGATTTTACAATTGACAC 36819 32 100.0 33 ................................ GGAGATGGATTTTTCTTGGAACGCGAACAAAGT 36884 32 100.0 36 ................................ ATGCGCAGCCGGGCCGATACATGATGAAGCTCGGCA 36952 32 100.0 34 ................................ TTCGCGTCGCTTGTCGAGTCGCTCGAGCAGTTTG 37018 32 100.0 34 ................................ ATAATTCTAATTGTAAGCTCTTCCATTAGCAAAT 37084 32 100.0 34 ................................ ACATATAGCGCCGTTCCATTAGCGATATAATCAA 37150 32 100.0 35 ................................ ACAACACCTAAGTCATAATCCGATATAAATTCCGC 37217 32 100.0 34 ................................ CAACTGATCATTGATTGTATTTTCCATTTTTTAA 37283 32 100.0 35 ................................ ATCGTCTCCTCAGTTGGGTTAAGAATTTGTCTTAA 37350 32 100.0 34 ................................ CGCATTGTCCAGCCCACAAACCCGCTCGTAAGTG 37416 32 100.0 35 ................................ ATCTCAACTAAGTTAAGGTCTGAGAACACTTTTTA 37483 32 96.9 127 ..........G..................... CCGATTCAAAATTCATCAAATATGGACAAAAGGCTCGTTTTTCTAACTCAAAAAAATGTATACTGGTATCAGGTTTGCACTTTTGGCTCCGGGCACCCTTACGCTGTCAGGGAGTCTGGGTGCGGCT 37642 32 87.5 0 A..............A....A......A.... | ========== ====== ====== ====== ================================ =============================================================================================================================== ================== 18 32 99.1 40 GTCGCATCCCACTGGGATGCGTGGATTGAAAC # Left flank : GTGCTGATCACCTATGATGTCAGCACGACGACGCCGGCCGGCCAGCGCCGCCTGCGCCAGGTGGCCAAGACCTGCCAAGCGTACGGACAGCGCGTACAGAATTCGGTCTTCGAATGCATCGTCGATGCTGCGCAGTTCGCCTCGTTGAAGATCCGATTGCTTGAGCTGATTGACGAAGAGAGCGACAGCCTTCGCTTCTATAGGCTGGGCAATAACTACAAGAGCAAGGTCGAGCATGTCGGGGCCAAGGCATCGATCGATGTAGAGGGGCCGGTTATCTTTTGAACGGAGAGTGACTGGTAAGTGACTAACGAGTAACTGGCGAGCCGGCGGTGCGAACCCCAGGTGCACATGATTTCCCCGGGAGGTTCGCACCCCGCGCCAGCACTGGCTTTTTTGGGGAAGGGCTCGTCTTTTGCGGCCGAAAAACGTATACTAAAAATAGGTTCGCACTTTTGGGCCCGGGAGCCCTTGCCCCGTAAGGGCTCCCGGGCGCCGCT # Right flank : CTACGAACAACAAGTGCGTCTGCACGTGCGCGGACCATACTAAGCACAACAAGTGCGTCCGCCTTTCGCGGACTTTACTTGCCATGAGGAGGGCTAACATCATGAAAAAAAAGGTCGTCGTAACCGGAGGCAGCGGTCGGCTAGGTGTGTGGGTCGTGAAGGAGTTGCTGGCGAGCGGATACGAGGTGGTCAATGCCGATCAGCGCCGCTCCGAGGAGCCGGGTGTTCGTACTGTCGTGACGGATCTCGAGAACCTCGGCGAAGTGTACGGTGTGCTGCAAGGCGCCGACGCCCTCGTGCATCTCGCGGCGATCCCGCAGGCTTACACCCATGCCAACGAGCGCACATTTCGCAACAATGTGATGACGACGTACAATGTGCTGGAAGCGGCGGCGGGACTGGGCATACGCAAAGCCGTGATCGCCTCCTCCGAGTCGTCGTACGGGCTCGTCTTCCCGCTGAAACGACTGGAGCCCTTGTACGTGCCGATCGACGAGGCG # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACTGGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14473-13585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000066.1 Paenibacillus sp. IB182496 Contig_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 14472 33 100.0 32 ................................. CGTCTCCAAGCAGATTCGTAACAATCCACTTA 14407 33 100.0 34 ................................. AAATCAAAGTAGGGGGCCAGCGCCCCCCTATGCC 14340 33 97.0 33 G................................ TTCATCGTCTCTCCCTCCTGTCGAAGTCCTGCG 14274 33 97.0 32 C................................ CGTTTTGTTGCGCATAACTAATTATTCCATTA 14209 33 97.0 32 A................................ TGCAGGCCGGGCGCGCGCGGCGCTTGCCCCGG 14144 33 97.0 32 C................................ CTGCGGAAGAGCGCGAAGAATTCGTCGAAGAA 14079 33 97.0 33 A................................ TCTGATGAACTCCTCCACGCTCGCGTACAAAAA 14013 33 100.0 33 ................................. TGTTCCATTGTCTAGGCCGATCAATATAAGCCT 13947 33 100.0 33 ................................. CGCCCGAAAATGGTACAAAACTCTTTATAAGGA 13881 33 97.0 33 C................................ TTGGTAAGCAGTGTTGTATTCTTCTAGCTTCGA 13815 33 100.0 33 ................................. TAGATGGATTTTTACTATGTCCGGCACGTAGGT 13749 33 100.0 33 ................................. TCGACGCCTACGCCTACACCGCATCGATCACCG 13683 33 93.9 33 A.......................A........ GTCACAATGTCGGACGCCGTCATGGAGGCGATG 13617 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================== ================== 14 33 98.1 33 TGTCGCATCCCTCGCGGATGCGTGGATTGAAAC # Left flank : GCTGCGGATTTCGCGGCGCCTTGTCCAATATATGGAATTTATAAGTTTCACGCTTATAGACGGTCTCTATATTCTCGGAACGAAGCTTGCGCCGCCGCCAGAGGACGGCGGAAGCCGTTTCGCCTTGGATTTATAGAAAGCATATGATCTTACGTAAACTTGTCTTCATTTCACAGTACGAGACATTCATGATTCCAAATCCCAAGCTCGTCATGAAAATAAGCTTGCTTAGGCCCGACCATCCCGTCATTTTTGAAGTGCGAACGGTGCAGCGCCGTCGTAGGTCGGGGCGCCGACTTTGCTGTTAATGGCCGGTGATACAGCGGCGGTACCGGTGCGAACCCCAGGTGCACATGAAATCCCCGGGAGGTTCGCACCCCGCTCCAGACCTGGTTTTTTTCAAAAACGGGCTCGTTTTTTGAGTCGAAAAACCATATAATAAAGAGGTTCGCACTTTCGGCCCCGAAATCCCTTGCCCCGCAAGGCTTCCCAGGCGCCGC # Right flank : TATCGTAACGCAGCTTTAAGGCTTTTCTCCGGATTCTCAACTAATCCCTTGATGCGTTTTGGGCAGAACGGGGTGAGTTAGTAGAAGTGGTAGTTCTAACGGACACCAGCGACGCTTAGCGCCTAAATTGAACGCGTTTGCTGCTCTAACGGACACCAGCGACGCTTAGCGGACATTTGAGCCTGCTAAAAGGACCAAGATCGCCGCTAAGCGTCTCCCTTGTCCGTTAGAAGTGGAAGGGTGCCGAAAAACTGCGCTAAGCGTCTCCCTTGTCCGTTAGAACTAGCTTACGCTCTCATCATAGGTTTGCTAATGGGACAAAGCGCTTGGATCTGCCTCGGATGTGTGAAGCTGCAGCATGAACCCGATATCGAGTGCGTCTAATCCCAAAATCGGGTGCGTCGTATTGCGTTGACGCGATCCTAAATCCCAAAACGCGCCGACCGCGACCCACTACGCTGTGGAGTCCATTATGCTTGCCCTACAGCGGCACGAAATGC # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGCATCCCTCGCGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9990-9495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000070.1 Paenibacillus sp. IB182496 Contig_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 9989 33 97.0 33 T................................ TTCCACATGGAAAGCGAAGGTGCTGCGCTGATG 9923 33 100.0 33 ................................. AACAGTAAAGGTTTTCAAGGGTTGGCCTACCCA 9857 33 100.0 33 ................................. TCAGTGACGGCAGCAAGTACGCGGCTCGATCCG 9791 33 100.0 33 ................................. CCAACCTCAGCGCCTGTTATGGCGCTGAACGCT 9725 32 93.9 34 C....................-........... TCAGAGAAAAGATGGATCTTATGTGGGAGTTGGG 9659 33 97.0 32 A................................ CTTGGTCTGTAAAACCTCGAATTTACGTGACC 9594 33 97.0 34 T................................ ACCAATAAAAACTAAGCTATCTGTGTCACAATAA 9527 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================== ================== 8 33 97.7 33 GGTCGCATCCCTCGCGGATGCGTGGATTGAAAC # Left flank : TCACGCTTCACACACAGGCTTTGCTGTTTATCCAGTCCCGAAGGGTGCCTCTCATTCGAAAGCGTGGCATGAGCCTCACTTGGCGACGGGAGTCCGTGGCACGGATGCGGAATCTGCCGATAGGACGATTGCAGCAAGTTACACTAACGGACAAAAATGTCCGCTAGCGGTTATTTCTTCGGAAATCCACATTCTTACGGACATTTTTGACCGTTAGAGCGAGAAACCAATGACATTATCGACTAGCCCGCCTCCTAACGGACAAAAGTGTCCGTTACACATGCTTGCTATGGTGAGGGGGGCTTATCGAGACGAAAGGAAGGGCGGGCGGTAAGTGCGAACCCCAGGTGCACATGAAATCGCTGGGGGGTTCGCACCCGCGCCGGCACTGGCTTTTTTGCGAATGGACTCGTTTTTTTATCCTAAAAAATGTATACTAAAAACAGGTTCGCACTTTTGGGCCCGAAATCCCTTGCCCCATAAGGGGTCGCGGGTGCCGC # Right flank : TCGTCAGATGAGGCGCAACTTAAGCTGTCTAAGGTCGCATCCCATGCGTAAACACGAAGCTACTCAAGCTGGCTGTAATGGGAAAGAGCGACGCTTAGGCTCCATCACGAAATAACCAAAGACAGCTAATCCATCACGCGGGCAATGGGCAATCGATCTCTCCTAAGCTAACGATTGCCAGCGCGCTTAATTCGGTCGATTTCAGGCGATTTCTAGACTAGCGGTTGCCACAGCGCTTATTTGGCCTCAATCGCGTTGTTTTGATTGATTTCAAGAAAATAAGACCTGTGGCAACCGTTACAATTCAATCGACGCTTTTTTGGGCGCAATAGCCACTGTGGCAACCGTTAGGTTCGTTGGGGATGGTGAAGGGATCAAGACGGTTTCAATCGCATCAGGTTATTCTGTAATGGACGATTAGCGCTTCGCCAGCCCAGGCCGTTCGAGGCTACCCGCGCTTGTTGGGCTGTTGCCCTCGCCAGACCACGCTGGCCCCGTCC # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCATCCCTCGCGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15782-14239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXIZ010000070.1 Paenibacillus sp. IB182496 Contig_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 15781 32 100.0 33 ................................ CTGTGCACCAGCACTGCAATCTTGCGCGGTTCG 15716 32 100.0 34 ................................ TATCTACGGAAAATCTAATCGAGATTAATCCGGT 15650 32 100.0 34 ................................ GGATGTACGACCCGAAAAAAAGCAGGGACTACAA 15584 32 100.0 35 ................................ TTACGTGCTGTATCTGCCCAAGCCTCCACTAAGGT 15517 32 100.0 34 ................................ ATTTTTATTCCGGTTCGATTTTTGGGCGCGTGTT 15451 32 100.0 33 ................................ ATTACGGTCCTCCTCCGTGCCAGACTCCGACGC 15386 32 100.0 34 ................................ ACGCTGCAACCCCCCGATCAAGTGGATTGTATCC 15320 32 100.0 34 ................................ TCAATGGCTGTATCGACGCCCGCGCCCTCGGCAA 15254 32 100.0 35 ................................ GATCTTTGTTCCGGTGCCGGTGATGGACTTGACGA 15187 32 100.0 33 ................................ CACACGGCTTAGGCACCGGCAACAATTGTCCTT 15122 32 100.0 34 ................................ AAAATGCGAATACTGATGGTCCACAATTTGCTGT 15056 32 100.0 33 ................................ CACCACGCGGCGACGAGGTCGCCGATCGCGCGC 14991 32 100.0 33 ................................ GTACGGCATGGTTTGGCCCCCTTGAAATTAAAT 14926 32 100.0 33 ................................ ATCGCCCTGGGCATCGCGGGTAGTGCGATTTTC 14861 32 100.0 33 ................................ CAGGCGTTTGGCTACCGACACCAGACATGGCGC 14796 32 100.0 35 ................................ CCAAAATAAAAAGCCCTCTAGGGGCTACTCTACCG 14729 32 100.0 34 ................................ ATACATGCCGATTGAACTTTTTGACACCTTTAGT 14663 32 100.0 34 ................................ ACCCCAGCTACGTATATGGTCCGAAACACCGCAT 14597 32 100.0 34 ................................ TTTGATCGTTGCATTACGGGTCAAATACCACGTA 14531 32 100.0 34 ................................ ATACAAAGAGAGATTACAGAAGAGGCCCGCGTGC 14465 32 96.9 34 .............C.................. AAATGGGCATGTGGGGCAACGCCGTGTCGATGGT 14399 32 96.9 33 .............C.................. GCACGTTGTTTCCGGTGCGGTGTCATGGAATCA 14334 32 96.9 33 .............C.................. ACGTGAAATACGAAGCGAGTTCTCCAGCGAAAT 14269 31 81.2 0 .............C..........-.C.G.GA | ========== ====== ====== ====== ================================ =================================== ================== 24 32 98.8 34 GTCGCATCCCTCGTGGATGCGTGGATTGAAAC # Left flank : TTCAGCGATTGGAAATACGTGTGAAGTCCCATTGGCGTTCTCCTTTCTACATCATGCAGCATCGTGCAATCTGCGTGATATGTCCAGTATATCGGGGCAATGTCAAGGCAGAATTAAGCCAGGTGCAAGGTTGTGTAAGCGCGGGAAGCCGGTCGGCCTGCAAGCCGCGACTGTCCGCTGAACCGTCGAGAGATCAAGCCCAATGAGCGATAAAGAGAAAGCACCGTGGCAGCGGTAAGCGTTTCAGGTTTGCACTAATGGACAAAAATGTTCGTTACACACAAGGAAGCTGCAAAGAGGGGGACCGATCGTGATGATAGCAAGGGCGACTAGTGCGAACCCCAGGTGCACATGAAATCCCTGGGAGGTTCGCACCCCGCGCCGGCACTGGCTTTTTTGCAAATAGACTCGTTTTTTTAGCCCCAAAAATGTATACTAAAAACAGGTTCGCACTTTTGAGCCCGGAATCCCTTGCCCCATAAGGGCTCGCGGGTGCCGCT # Right flank : GGAGGTAGATAATAATGACATCGAAAGAGCGTGCAAAACTAAGAGAAATGAGATTATCTAAAAAACTTACTGCTACTAAAGTAGGTGAACACGTTGGATGTAGCTATGCTCAAATATCTCAATTTGAACTAAAAGAAGATTATCCGATGGCAGCAGACAAAATTAAGCGATATAAAGAATTTATTATGAGCGCTCCGATCCCAACTGCGGAAGTTAAATTAAAATCAAAAATAAAAAATGTCTCTCTTAAAGATGGAACTCTAAAGGAAGGGCGGGAAGGGAGAGGTTATACTCAGACCGAACTTTCTCAAATACTTAAAATAAATCAGTCAGCATATAACTTATATGAACAAGGAAAACTTGATGTCCCTATTAAGTTATTTGTTGCATTATCAGAGTTAATCAGCATAGAAGCGGATGACATTGTAAAATTTAAGTATTACAATCCGTACTCTTCAACGAAAAAAAGTTTATAAGATGGATAGTACAGAGTGTAAGGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGTGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //