Array 1 2938-3149 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHJ01000049.1 Lactobacillus helveticus strain IMAU10049 Scaffold49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2938 29 100.0 32 ............................. TGGACTTCAAATTATTATCAATCAGACTCTGG 2999 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 3060 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 3121 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGCGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TCAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCATATGGCTTAGAGGCTTGATTGATGAAAGATTATCTAAAAAAAAAATTTGAAGTAGCAATAACTGATTGAGTTTGTTGGTATTCTCCACGTATGTGGAGGTGATCCTTAAGAGGGCGTCAGGTCAGTTTATACGGTCAAGTATTCTCCACGTATGTGGAGCAACCAAAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23479-23053 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHJ01000032.1 Lactobacillus helveticus strain IMAU10049 Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 23478 29 100.0 36 ............................. GTTTTAATTTGTGCTGTGGTAGGCTTTTCGCGTCCC 23413 29 100.0 37 ............................. GTTGCTTGTGCTTTGTCAGCATTAGCTTGGTTAGTGT 23347 29 100.0 37 ............................. GTATTACACAACTGTTCGGGATCACTAATATCAGTAT 23281 29 100.0 37 ............................. GGAAACTAGTGAGTTGCCATCGCCAGGCCCCCAATCA 23215 29 93.1 39 ............T.............G.. TTTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 23147 29 86.2 37 ..C.........TC....G.......... TAAAGCCGAATTTTACACCAACTTTACTAAATATGCT 23081 29 79.3 0 .A......C...........G..AA...T | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 94.1 37 GTTTTTATTTAACTTAAGAGAAATGTAAA # Left flank : AGGAACTCCTTTTTCTAATATTTTAAGAAATTAATTTAAGGAATCATTCATCCTTACACAAACTATTTTACAGTCT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGAGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGATGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 34678-35303 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHJ01000009.1 Lactobacillus helveticus strain IMAU10049 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 34678 30 100.0 36 .............................. AAGGCATTGGTCAATGGGCTAATAGCATTGGACGAG 34744 30 100.0 36 .............................. ATTTGGTGGACTGGCTGGAAAGGCTCAACAAGTTTA 34810 30 100.0 36 .............................. GGCTCAAGGCAAAGCGGTTTCTACTAATTAATCCAA 34876 30 100.0 36 .............................. TCAGGCTTATTGGCCGATAACAGCGCTTTATTGTTC 34942 30 100.0 36 .............................. TATGCAAAGCGTGTTCGCTTATTAGGTGCAAATGGT 35008 30 100.0 36 .............................. TAAACGTTCCCGATCAATCTTCTTAATGAAATTACT 35074 30 100.0 36 .............................. ACTCGTAAAAGTGCGTTAGCACGAGCGATTTTAACA 35140 30 100.0 37 .............................. TAAGTAATATGGACAACTATACGTGCTAATCATATAA 35207 30 100.0 37 .............................. ACAAAAGAAATGTATAAGTGGCTATCAAACTTCTTTG 35274 30 96.7 0 ....................G......... | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.7 36 GTTTTTATCTAACTTAAGAGAAATGTAAAT # Left flank : GTTTCCAAATCTAGGTCGACGAGAAGATTTGGTAAATTTTGAAGAAGTAAAAATCGTTGATGTAAAAAAAAAGGATGAAGACTTAACTGTAAATCATGGTGCGTATATACCAGTTGAAATGTCTGAAAATATCGGTCTTGAAAATGAAGGTATTGGATATAAAGGAACGCATTATTACTTAAATAAGGACTATAAACTGGTAACGATAAAAAAAGGTCAGACACAACGTCGATGGAATAAAGTTGAAGTTATATATGCTTCTGGGTTTACGGTTTATAAGAGTTACGTTGATGAAGATAATAATGTAGTGTTCTTAGTTTAAAATCTGTCGATGTCCAATAAGCAGTTTTTACCAGTAGATCGACAGATGTGATAAAGCCTTATGTAATAGTTTTTCTAGAGATTCCAATTAATTTAGACTCAAAATGATGATATGTTTTGGGAGGTCGATAGAAATCATATTACAAAGCATTGATGTATAAGACTTGGCAAGTGGAACT # Right flank : TCGCTCTCTAATAGGGGGGGTTGTACATATCCTTTATTTAACTTACGAGAATATACGATATTAACCATAAAGATAGAAAGTGTGAAAGGATGAATGAATATTTAGCTAAATCTTTAGACCAATCTGAAGGAAATCATTGTGAGACGATCGTTGAACATACTAATAATTTGTTAAAGCAATATAGTTTATTAAAGCAAGCTTATCCAGATATATTTCAAAATTTTTGGCTTAGTCAAGATCGATTTAACGATATGACAAAACAGGTAGATATTCGTAGTAAAGACGATTGGCGGCTTTTAGAAATTGCTTGTAGCTATCACGACTTAGGAAAAATGAACCTACGCTTTCAGAAAAAGGTAAAAGCAGGGCAGAGCTTTTGTAAAGGTGAAATTCCGCATGCATTGTTAAGTATTACGATGCTTCCAATTGATGAATTACAGAAGCATTATACTAAAGATCAAATCATAGCATTAATTTTTGCAATAGAGTGGCACCATGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 39799-41210 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHJ01000009.1 Lactobacillus helveticus strain IMAU10049 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 39799 30 100.0 35 .............................. AATCATAAGGATTCTGTGGCGGATTATAGCTGCAA 39864 30 100.0 36 .............................. CCTGAAATGAAGGACAGAATGAGTGCAGCAAAAGAA 39930 30 100.0 36 .............................. TTTTAACATTAACTGGCAACGATAGCTGGTACTTAG 39996 30 100.0 36 .............................. GAGCAAAAAGCTCCTACTAGAAGTCGTGAGACTTTG 40062 30 100.0 36 .............................. TTGAGAAACGTAGATTTAGATAAAGGAACTATGTGG 40128 30 100.0 35 .............................. CAGATCAAGGTGATGCAGGCAATGCGCAAACCGAT 40193 30 100.0 36 .............................. TATAATTTGGCCTTTTCTCTTTATGTGACTTATTTT 40259 30 100.0 36 .............................. GATGAACTCAAAGGCATGTATAGAGCATTAGCTGAA 40325 30 100.0 36 .............................. TTTCTTTGGAATGAGCATTGTGGCAAAGGGTACCGC 40391 30 100.0 36 .............................. TTAGCAATGAAATGCCAATCTGGACTGGTCTCACGA 40457 30 100.0 36 .............................. AGTTGTACCATTAAGTTTTCCCAAGCTTGCGTTTGG 40523 30 100.0 36 .............................. AGATTTTCTAAACTCCAAAACTTTTTAGGTGGCTTT 40589 30 100.0 35 .............................. AAATTTCAGCAGGCTCAGATTGAGTACAGTACATA 40654 30 100.0 36 .............................. CTCCTAATAGACTCTTGTCTCTCTAATATCGTTCTA 40720 30 96.7 36 A............................. ACTATTGAGGGCGGTAACATCTTTAAGCGTGAGTGG 40786 30 100.0 36 .............................. GCTTATAATAGTTCAAACGGTAGTACTATGGATGTC 40852 30 100.0 36 .............................. TATTATCTGCAAGTTCCCACAACGTCTTTGGACGCT 40918 30 100.0 36 .............................. TTAAATATCCATCGCCGTCGCATCGCTGATTAACTA 40984 30 100.0 36 .............................. AGCACGCCACCAAGCGGCCGGTGCAAAGTATTATGT 41050 30 100.0 35 .............................. ACAATTGGCTTGACTTCATCAATTAAGTTCATACG 41115 30 100.0 36 .............................. TGAATAAATTAGCTTAACAATGCGCTTGCGATACGC 41181 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 22 30 99.8 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATTCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : GAGCACAGTATCAATTGATTGTCCGTTTGAGTGAGCGGTTTTTATGAAACTGTCAAATCTGTTGTGTAAATAGATCTTTCTCATAGATTGATTTTTTATTCTTTATTTAATCAAAGTAAGATTCTAAGGTGTCCTGAACCTGACCAAAGCCTTTGTGAATTCGGTTGAAGTAGCGGTCATTGTAACTCATTGCTTGGATGCCAATGAAAGTATCAAGCGACTGTTCAGTCGGAAACTCTGCTTTAGGCTTAGCTTTACGCTTGATAACGTTGTTAAAGGATTCGATCATATTGGTGGAGTAAATTGAGGCCCTGATTTGTTTAGGATAGTCATAAAAGACCAGCAGATCAGGTTCAATCTCCTTGAGGTTTCTAATGCCATGATTATAAGCTCTGTTCCACTTGTCATAGAAGGCGTGCAAGACTTTGATCGCAGCTTCTTTATTTGGCTGTTGATGGATTTGCTTGAATTCATTCATGATCGTTTCGCGATCATCTACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //