Array 1 152862-152380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZUJ01000001.1 Corynebacterium diphtheriae strain 17801 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 152861 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 152799 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 152735 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 152671 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 152607 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 152543 36 100.0 28 .................................... CCAGTCAAAAACTATCACCTCTCATGGT 152479 36 100.0 28 .................................... TCGAAGCCAAGCGAAAAGACGATTCCCA 152415 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 96.9 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 183-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZUJ01000011.1 Corynebacterium diphtheriae strain 17801 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 182 28 100.0 33 ............................ GGGTCGGGTCTGATGGCATGCCGGTCGCTCGCG 121 28 100.0 33 ............................ TTCGGCAGCGTCACGCGCAGCGACCTCGCTTTA 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GAAATACCTCCGCGTGTGCGGAGAAGAC # Left flank : CCGGTGACGATCACGCGCATGCCCTTGGTGAGGGATTCTGCAACGTTTTCGGCAGCTTGGTGCCAAATGTTGCACTGCAAGAAAACCGCGTCACCATCTACCCACTGGTTCGACCGGGAGTCGTACTTCTTGGAGGTAGAAGCAACACGGAAGCTGGTTACTGCTACACCATTAGGGGTGAAGCGAAGTTCTGGGTCTGCAACGAGATTACCAACAATGGTGACGTTGACTTCGCCTTGTGCCATTTTCTTTGTCCTTTGATCTAGTGCGCGTTGAAGGTATGCGCGCCCCACCACGCAGCACTTACACTGCTTCTTCTATAAGTTCCCGCACTTGCCCATCTTCAATCACAATGCCATGTTCACCGGTTTCATCAACCAGCTCAACCCACACCTGGAATCCTGTTTCTGTCGCAATATCGGAGAGAATCTTCTGAGACTCGGAGTCCATGAGCGAGCCATCAGACACACGCATCACACGAATATTTGGATTGCCTGCCG # Right flank : CAAAATGTGGGGAGAATCCCCGCAATCTGAGCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAATACCTCCGCGTGTGCGGAGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 115730-116855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZUJ01000005.1 Corynebacterium diphtheriae strain 17801 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115730 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 115791 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 115852 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 115913 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 115974 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 116036 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 116098 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 116159 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 116220 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 116281 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 116342 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 116403 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 116464 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 116525 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 116586 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 116647 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 116708 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 116769 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 116830 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //