Array 1 4159-3764 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGX01000077.1 Lactobacillus helveticus strain IMAU30025 Scaffold77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4158 29 100.0 32 ............................. CACACTAGCTAAATCTAGACGCAGAATTACTG 4097 29 100.0 32 ............................. AATAAATCGCCATTTTTAGGTTTATTAAGTGG 4036 29 100.0 32 ............................. CAATACCCATTTCTTTGGGATAAGCATTGTGG 3975 29 96.6 32 ............................C TCCTATGATACTAGAGAAATCAAATCCTTTGC 3914 29 100.0 32 ............................. TCGCGCATCATCTTGCCAACTGTTTCATCAGC 3853 29 96.6 32 ............................C TTGGTCTCCGTTTGCCTTCAAATATGGAAAGC 3792 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATTTGATTGAGCATTTGATTGAGCATTGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATAAATAAAAAGAATAAAATAAATTAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAAAAACGAGACAATACATATTATGTGTATCCTTTAGAACACGATTTACTGATAAATGATGATGCAGCTCATGCTTTAAAAGAATTACCGGCAAATTCAGTTGATTTGATATTTACATCACCACCTTATTACAATGCTAAAACAGAATATAGTGAGTTCTTAACATATGATAAATATTTGGCTTTTATCAAAGAAATTGTTGAAGAAGCAACCAGAGTTTTAATACCAGGGAAATTTTTTGTAATGGATTCATCTCCTGTATTAATACCTCGAATTGATAGAAATCATTCATCTACGAGATTAGCTGTACCATATGATATTCATAAAATCTTTATGGATTTGGGCTATGAATTTATTGACGACATATATTGGGTTAAACCAGAGGGTGCTGGCTGGTCAGCTGGAAGAGGCAGAAGGTTTGCAGCTGATCGTCATCCTATGCAATATAAAGCTGTTCCAGTTACTGAAAATATTATGGTATATATTATGGTATATAGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8754-8359 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGX01000019.1 Lactobacillus helveticus strain IMAU30025 Scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8753 29 100.0 32 ............................. AAGAGCCATAGTCCACTAAGTAGTCGCCACTT 8692 29 100.0 32 ............................. GAACCTAGGAATAAATATGGCTATTGCAAGGT 8631 29 100.0 32 ............................. TGCTTCCGTCACACACACGACTACAAGCATAC 8570 29 96.6 32 ............................C GATTATGGAGGTAGTCCTCATAACTGAGATTG 8509 29 100.0 32 ............................. ACACCTATGTCAATTGGAGCTGATGGTGAGTT 8448 29 100.0 32 ............................. ATTTTCTACCAACCAAAGGTAAGCGCAAAATT 8387 29 79.3 0 C......................TC.GAG | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTTTTCTCCACGTAAGTGGAGGTGATCCT # Left flank : AAACAGGCAAGTACACACAGTCCTAAAGAGCCTATGAGTAAAATAGTAAAATTGAGCCACTATCAGTTTAAGGTGCAGCGCGTAGGGCCAAACCTATATCACTTTATTCCTATAAACTTTGACCACCTGCCAAATGTGCATCCCTTTATAGCCATTGATAATAGCTATTGGCTACTTCAGTGCAAACCTGAAGAGTTGGAAGGCTATATAGTAAGCTTATCTAAAAAAATAGACACTATGGACCTAGAAAGTATGGACCACTTCTATGCAAGACTGGCTAAAAATAGCGCTAGCCCTTTACAATGCGAGCCGGTAAAAGCATACCATAAACCAAGTGAATTTATTCTTGCCCGTGGCAAACGGCAACAAGCCGTAGACAGCCTAGAGCAAGGTAAATTTCACCACCACTCATACAAACGCGGTACTTTTTGGGACTTCCTGGCTGGTGTATGGTGGGGCGATCACTTTAATAATTAGGGATGCACCCCTTTTTATTTATA # Right flank : GATCAGTCGTCTAACAGGGAAGACAGGCTTATTTGATATTAATAAGCAAGATATGGGTCCAATTCCCATCATCCTCAATATTTGAATAAAGTAAAAGCTCTTAGTTGTGAAAACTAATGGCTTTTTTGATGGATTAGTAATATTTTAGATCATCCTAAATTTTCTTTTATATAATAGGCTTGTATTGGGAGTAAAGGAGAAAATAACAATGTTATTGGCATTGGTTTGTCTAACATTTGCTGGTGTAAGTATTTCTACCGCTCAACCAGTTCAAGCCATAAGCAAGTATTCTGAAAAATGGCATACTATAAAAACTACTGAAAAAGTTTATGACTACAAACCATATGTACCTCGTGGTGGTGCTATGTATCAAATGAAATTCATTCATAAAACACCGATCAAGAAAGGCACGTATCTAAGATTGATTCGTCTAAGTACTTCTTATCCATGGGAGATTATACGTGGCAAAAATCATTTGGCAATTTTAAGAAGAGATGCTA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTAAGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 9431-9702 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGX01000019.1 Lactobacillus helveticus strain IMAU30025 Scaffold19, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9431 28 100.0 33 ............................ GTCCAGACTTTAATGGCATTACTGCTAGTGGTG 9492 28 100.0 1 ............................ G Deletion [9521] 9513 28 85.7 8 A..AA....................T.. CAAAACAA Deletion [9549] 9553 28 100.0 33 ............................ ATCAAAATTTACCCGACACCTTAAAAGGGTACA 9614 28 100.0 33 ............................ TCAATATTGCTTTCATCGCAGCTTACTGCTTGA 9675 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 22 GGATCACCTCCACTTACGTGGAGAAAAC # Left flank : TATGCTTTTACCGGCTCGCATTGTAAAGGGCTAGCGCTATTTTTAGCCAGTCTTGCATAGAAGTGGTCCATACTTTCTAGGTCCATAGTGTCTATTTTTTTAGATAAGCTTACTATATAGCCTTCCAACTCTTCAGGTTTGCACTGAAGTAGCCAATAGCTATTATCAATGGCTATAAAGGGATGCACATTTGGCAGGTGGTCAAAGTTTATAGGAATAAAGTGATATAGGTTTGGCCCTACGCGCTGCACCTTAAACTGATAGTGGCTCAATTTTACTATTTTACTCATAGGCTCTTTAGGACTGTGTGTACTTGCCTGTTTCCTCATTTTGTTTACCTCCTGTTTATTTACTTAAGCAGCTAGCTAAAAACATGTAGATTTGTTCTATAATCACAAGGATCCCACCAGCTATTAAAATTGTTTTAAAGTGTAATAAAAACTTATCCATAAACCAACCCGCATACTTATCTATAAGCTTGTCTAACTTTGCCTTACTCA # Right flank : CACTAAAAGAATCCCGTCGTTAAGCCATTTTTAATTAATAAAAAGCTGAAATTCATTCAGTTTGTATTTTATACAACAATAATTATACCAGCGTATTTCTTATTCTTCACTCCCATAAATATTCACCAAACTAAAAAAGCCCCAAACGGGACTTTCTTCATACATCTAATCTCTCAAAGCACGATTGCCAATATCATGGCGGTAGAAGCAATCTGGCAGATCAAGCTTGCTCAAATATGAATAAACATTATCTTGCGCCTGGACTAAATTGTCGGCTTCAGAAATCACCATGAACAGGCGGCCGCCATCACCTATCAGATTATCCAAATTACCTTTCACGTTGGCATAATCAATATAAGTATTAGTGCCGTGAGGCAACTTGCCGATCTTCACGTTAGGTGCCGGATGCGTTGGATAGCCTTTGCTGCAGACAACTACGCCTAACACTGAACGATCATTTTCTTCAATTTCAGGCAGCTTTTCATGATTTACCGCTGCGT # Questionable array : NO Score: 4.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-1.17, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACTTACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //