Array 1 5858-5293 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEAW01000085.1 Limosilactobacillus reuteri mlc3 Lreuteri_mlc3_contig_00085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5857 36 100.0 30 .................................... AAAAAATCAGCTTTCTACCACAATTGGTAT 5791 36 100.0 30 .................................... CGGTTAATTTAACAACTACTCCACTAGCAC 5725 36 100.0 30 .................................... CTATCATCTTGGATATGTTTCCAGTCGCTT 5659 36 100.0 30 .................................... TAAATTAGCAATATAGTCTTTTCGTTCGTT 5593 36 100.0 30 .................................... ACAAGCAACCGACGCGGCAATTGCAATCGA 5527 36 100.0 30 .................................... AAGATGGAATTTTGGATTGTTAACTATCAA 5461 36 100.0 31 .................................... CCATTCCGGCATTGGCTCTTTAATCGGCTTA 5394 36 100.0 30 .................................... ACTTGGTGAAGCTGCTTCAACGGCTGGCGC 5328 36 91.7 0 ........................G...A......T | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.1 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GAGAGGGCTTTTTTTATTTACGATATTTT # Right flank : AAATATTAGTTGAACTCACGGCTGAGAAAAATCTTAAATATGCTTCAATTTCCCCGCCAACTTCAGCGGGGCTTTTTCATTTTCTTTTCAAACTAGTGTATAATATTTACTAAACCCATTACTAAAAGAGGTGAAAAATAATGGCAACAATTAAAGAAATTGCGAAAAAGTCAGGGTACTCACCAGCAACGGTTTCGCGTCTTTTGAATAATGACCAAAATTTATCGATCAGTCCAAGTACCCGTAATAAGATAATGACGGTGGCTAACGAGCTTGGCTATTGGAATGATCATAAAAAGAATTCTCAGCAGCAACCAATCCGTCCTAATCTTGCTCTATTGTATCGGGTAAGCGGTAAAGAACAACTGCAAGATGAATATTTTGCGTTTTTACGCAATGCAATTATTAAAGAAGTCGATGAAGCTGGAGCGCAGATTGAGATCTTTAGTAATATCAAAGATTTAATTGCGGCGGCTGATTCGTTCCAAGGATTTATTGGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 523-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEAW01000038.1 Limosilactobacillus reuteri mlc3 Lreuteri_mlc3_contig_00038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 522 36 100.0 30 .................................... ACACAAGATGACTACAGTACGATCAAGTAC 456 36 100.0 30 .................................... AGACTATATAGCTAATCTAATGCTAAAACG 390 36 100.0 30 .................................... CGCCCTTAAAATGTTTAATGAGTTAAAAAC 324 36 100.0 30 .................................... CAACTCTTTGGACTTACACCCAAGACCACG 258 36 100.0 30 .................................... TGGTCTATAAAAAAGAACGAGCGAAAAAGC 192 36 100.0 30 .................................... TAGCGCCAACAATATTCCCGCTTATCATGC 126 36 100.0 30 .................................... CCCTATTAAGGCTTTAACGGGGGCTGCAGG 60 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GAATAATAATTTAGCTACTATTTATTCAACGGAAATTGTAAAGTCAATAATAAAAAATTTAACAGAAGAGGATCGTCATTTATTAGATGCTGAAGCACGTCGACTTTATTCGAGTGTTCAAGAAATTTTATTTATGACAGATTTACCGCTTGAAGTTCGCTATGATGGTGACATCAAACGATTATTAAATTATTGTAAGATTAAATTTTCACCATTAGTTCAGCAAAGTCCTTATGATATAATAAAAACAGATTTAAAGTTACATTTAGAATGTGCTGATAGTTCATGTGTTGGGTTAAGTAATGTCACTAATTACCTAGATTCAGCTCAATTTAACGAACTACAACAACTAAACATTGAATTGAAAATTCCTGTTTTATTAATAGAATTCACAGAAATAGATAATCGTAGATACTATGGAAATGCGGATTTTTATTATATTGACAAGGATTTCGTTGATTGGAAGTTATAAACTATTAATTCAAAATTAGAAAATAATG # Right flank : CACACTTGCAAGAATTGACGGACGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 31-462 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEAW01000028.1 Limosilactobacillus reuteri mlc3 Lreuteri_mlc3_contig_00028, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31 36 100.0 30 .................................... ACCCGTTTTATCTTCATAAATAACAAAATT 97 36 100.0 30 .................................... CATAACATGAAACTATCTGTTTATCATTTT 163 36 100.0 30 .................................... TCCACGATGTTTATTATAATAATCTAAACA 229 36 100.0 30 .................................... TAACACAGGTCACACGCGCGTATATCGTAG 295 36 100.0 30 .................................... CAAATAATTTTTTTGCACAAATTTATATTT 361 36 100.0 30 .................................... GCCCGTATTCGTGAGCATAGTGATAAATTC 427 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : AGCGTCATTGCTTCGCTAGAGTGATTGAGCG # Right flank : TAGGCTCATTCAATCCATCTGGTGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //