Array 1 211116-209639 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNZ01000001.1 Salmonella enterica strain BCW_4920 NODE_1_length_590523_cov_4.05434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 211115 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 211054 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 210992 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 210931 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 210870 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 210809 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 210748 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 210687 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 210626 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 210565 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 210504 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 210443 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 210382 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 210320 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 210217 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 210156 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 210095 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 210034 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 209973 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 209912 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 209851 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 209790 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 209729 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 209668 29 96.6 0 A............................ | A [209641] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228863-227248 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNZ01000001.1 Salmonella enterica strain BCW_4920 NODE_1_length_590523_cov_4.05434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228862 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 228801 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 228740 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 228679 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 228618 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 228557 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 228496 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228435 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 228374 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 228313 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 228252 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 228191 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 228130 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 228069 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 228008 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227947 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 227886 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 227825 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 227763 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227702 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227641 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227580 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227519 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 227458 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 227397 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227336 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 227275 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //