Array 1 1832-123 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJME02000118.1 Aggregatibacter actinomycetemcomitans serotype e str. A160 contig00285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1831 28 100.0 32 ............................ ACGTTTACGTCCCGATGGTAATTGTCCTTTAA 1771 28 100.0 32 ............................ TATCATAATCATGTCATAAACTTGTTCAAGCA 1711 28 100.0 32 ............................ TACAAATTGGTATAAAAGTGATTTTAGAAATT 1651 28 100.0 32 ............................ CCCAAGGTTTAGAGGGTGTGTTTATGGACGTT 1591 28 100.0 32 ............................ TCCTGATATGGGTTTCGTTATTAACACAATTT 1531 28 100.0 32 ............................ AAACGTAATAGGAAAACCTATATCCTTTTGTT 1471 28 100.0 32 ............................ ATTGAACTTGCTTATGAAATGAGTAAAACAAA 1411 28 100.0 32 ............................ TACAATCAATGGATAGGTTGGAAATTTGTAAA 1351 28 100.0 32 ............................ ATAAGGAAAAACAATATGAAAAAATTTATTTA 1291 28 100.0 32 ............................ TACTGTTGCAAAAAAAATGTAGTTTTCAACAG 1231 28 100.0 32 ............................ TACAAAACAAGGTCGATTTTAACAACCCCTAA 1171 28 100.0 32 ............................ ATTGATATTGACAACTGGTGTGATAAAAAATG 1111 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAAACCGG 1051 28 100.0 32 ............................ TAACAGAAATAAGAAAAAAGGTGAAAGAATTA 991 28 100.0 32 ............................ TCTCGGAAAACAGTGTGTGCGGTAATTTTTGC 931 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 871 28 100.0 32 ............................ TACAATGTATCTGGGACCGGTTTAAATAATTA 811 28 100.0 32 ............................ TATTGGGAATAATATGGCTGCGCCGGTTATTA 751 28 100.0 32 ............................ TCCTCATAAGCTTTGCGTCGCTCTGCTGCGCC 691 28 100.0 32 ............................ TGAAAAATACGGTAATGCTAAAGAAGATTTAA 631 28 100.0 32 ............................ TGCAAACGCTTATTATGATTAAGAAACAAAAC 571 28 100.0 32 ............................ TTGTTTGAGTTTCCTGTTTCGTTGTGATTCAT 511 28 100.0 32 ............................ GCAAGCGTCTATATGACAAGGAACGAATAAGA 451 28 100.0 32 ............................ TCGATGGTTTACTTATAAGCAAATTAAAGCAC 391 28 100.0 33 ............................ ATGAAAATGATTAAACGACGACCATCTAATAAT 330 28 100.0 32 ............................ ATAAGCCCCATTCAAAAACGCCTGTTTTTCTT 270 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTATTCTGG 210 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 150 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAAATCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //