Array 1 88-1374 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQX01000010.1 Bacillus methanolicus strain DE0196 NODE_10_length_122875_cov_40.261554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 88 32 100.0 34 ................................ TTTTTGGGTGATGAAGCAGTGAGTATAACTGATG 154 32 100.0 34 ................................ GTTTAAATACTACCGCAGTGGTCGCCTCGGCAAG 220 32 100.0 34 ................................ TTTCAGGTTTCGGCATGCAAGCTGCTGAAACAAC 286 32 100.0 34 ................................ ATAGCTCTATGGTGGTTTTCATTAACTACATTAA 352 32 100.0 33 ................................ ATTGCGTGTAATAAGGATGGTGCAGTGATGAGC 417 32 100.0 33 ................................ TCCCCAGCTGGATATGGGAGAAGGCAGAAAATA 482 32 100.0 35 ................................ CAACGTGTCTATAAAGGAGTACAACCCTCCCTTAG 549 32 100.0 34 ................................ TACGTTATTTCGGCTAAACGAGAACATTATTTCC 615 32 100.0 34 ................................ ATCATCACTCAGCTTCATGCGATCCTTAAATTGC 681 32 100.0 34 ................................ TGTAATCTCTCCAGTGAGCGAGTACCCAATCAAT 747 32 100.0 35 ................................ TCGATCCGGAGTAGTAACTAAAATATCGTCATACC 814 32 100.0 33 ................................ TGTGAATTTTACCCCACGTGGATGAAGAATAAA 879 32 100.0 33 ................................ AAAACTTTATTAAAACAAATAAACGAAAGTTAT 944 32 100.0 34 ................................ TTAAATTGCTATATCCCCACCTTGGTTTATGGCT 1010 32 100.0 36 ................................ TATTAGATATCATTGTAAAAGTTTGTAAACCATCCC 1078 32 100.0 34 ................................ AGTGATGCGATCACCTAACAAAAAGATATCTAAT 1144 32 100.0 36 ................................ AGCAAAAAAGCTTCGAGAGAAATTTGGAGAACTGGC 1212 32 100.0 34 ................................ TCGCACGACATCAAACATCATAGAAGCAAATTCG 1278 32 100.0 33 ................................ TAATGTCCGGTCATAGTCTTTCGAAACTTGTAA 1343 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.8 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATTAGTATAGTTCATTCTACTTGACCTTAAAATTTCTGTCTAACTAAGTGTAGCCGATCCAAAGAAATATATATGGCCATCAATCG # Right flank : TACTGTACAGTTGGGTACTAATGTAGAGATATGGATTGAAATCGTGACGGTCTACCTAAAGACGAAATGGAAATGACTGTCGAACCCTACATAAATTTCACACCAAAGGAACTAGAAAATAACACAGGAGAAGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTTCTGGTGGTGTGGATTGTGAAAAAAATTTTGACATCAAAGAAGGCTGTGCTTGGAGGCTTGTTGTTCTTGCTTATTGGCATATGGGTTTTTAGCGAAATGAGCAATCGTTTTTCCATGAAGGGGCAGGAGCCAACTGATGAAGGCTATATTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGATTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTAGATGATGGAATGAAACTTTTAGGGACAGGAATTAAAAGTGGTGATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 67448-69129 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQX01000017.1 Bacillus methanolicus strain DE0196 NODE_17_length_87609_cov_39.688061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 67448 32 100.0 35 ................................ GTGTTTGGGATAAACAGTACAAAAAATGGTGTGAC 67515 32 100.0 36 ................................ ATGAAATGTACGGTTGGTTATTCGGAGGGTTTATCG 67583 32 100.0 33 ................................ CTTGAGAACGTCAAAGGGCTCCTTAACCACGAA 67648 32 100.0 33 ................................ TGGAATTACGATTTTGGTGGTACTTGTTTTTAA 67713 32 100.0 33 ................................ AGAATGTGATTGGAAATATGACTAATAAGCAGC 67778 32 100.0 34 ................................ ATTGTTTACTAGCTTTAGATTATAAGGATGGTGA 67844 32 100.0 34 ................................ TGTTAAATATTCTTATGCAAAAGTTGGTGATTAT 67910 32 100.0 34 ................................ TGCCGTAGTTGTCGGTCTCAATCTTGGCGATATC 67976 32 100.0 35 ................................ GGCAAAGGGATTAAGAATGTATTTGATGGTGATAA 68043 32 100.0 33 ................................ CCTCCTAATCAACTGGACTATCATTTTGTTGCA 68108 32 100.0 34 ................................ TGAAAACCAATCAGACATTGGCGCTGACTTTGCA 68174 32 100.0 36 ................................ CGGTCTGTCCATGTCTTTAGCGGAAATACCTTCATC 68242 32 100.0 33 ................................ TGCTTGTGATGATGTGGAATATGAACTTAATTC 68307 32 100.0 33 ................................ TACTTGCATATGGGTGGAGACGCGAATATAAGC 68372 32 100.0 34 ................................ CTTCTTGTGCTTTTTGAAGCATCCCCATTCTCAC 68438 32 100.0 34 ................................ ATTATGCTGCCGGATTAGCAACTATGTATGATTT 68504 32 100.0 34 ................................ CTTTGTTTTTTGTTTTTACTGTTGATGTTTTTGC 68570 32 100.0 33 ................................ TTTTAACCAGGACTGCAAAGCTGTCTTTACTTT 68635 32 100.0 35 ................................ CGCAATCTTAATCGAGTTTATACGTTCGACCTTAC 68702 32 100.0 35 ................................ CAGAGGCGAGTCTATCGAATTATACAGTGCTCCGT 68769 32 100.0 33 ................................ TGTGATTTTTCCGTTTTCGTCAAGCTCAATCTC 68834 32 100.0 34 ................................ CCAAACATGAAGAAGAAACAGGCTCCCACAATCA 68900 32 100.0 34 ................................ AGCCATCTAGTATAATTTGTTTAGATGAATCACA 68966 32 100.0 33 ................................ ACCTGAGTATGAAAATAAGCAATTCTCAGGGGT 69031 32 100.0 35 ................................ CACTTGCACCAATTATAAAACTGTTGCCCTCTTTT 69098 32 81.2 0 ......T...A.......A...AA.....G.. | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.3 34 GTCTCCCTCTGTATGAGGGAGTGGATTGAAAT # Left flank : CGATGATCTGGATGTTTATCCCCCATTTATGTGGAGGGGATAGCTTTGTTAGTGCTTGTAACCTACGATGTGGCAATTACAACAAACGGCGGAGCGGCCAGATTGCGAAGAGTGGCTAAGATCTGTGAGCAATATGGTGTTCGAGTTCAAAATTCTGTTTTTGAATGCATCGTAGACGCGACCCAAAAAAAGAGGTTGGAAATGGATTTAATGAAGGTGATTGACCAGCAATCTGACAGTATCCGAATCTACCAGTTGGGTAATCAATACCGCAATAAAGTGAATCACATCGGCGCCAAGGAAACGCTCAATGTGGAAGACCCGCTCATCTTTTGACGTCGCTGGAAAACCTGAAGTGAACATGAAAACCCGGGGAGGTTTTCCGAGATTTTTCGTTAATTTTCCTGTTTCTGTAAGCGGATTGTGGAACTTGAATACTTCAGAGTTGAGAGTTACACAACATCTTGTGTCAAAGTATTAGTGGATTAAAAGATGTTGCG # Right flank : TGAGGATATAAAATAAGAGAAGGCAATTCAATTGTATCCTCACATTCATTAAAGTTTTCACTTTTATTTCATAAAAAGTATGAATTTTAAAGTAGTTCTTCTCTCACTTTTGTAATAGAATGAAGTTATTGAAAGGGTTTTCATAAAAATGGTAACTTAGCCTGCAGTTATCAAAGGAGAGGATAATAATGAAAAAGATTATTAATGACCCTAATTTGGTAGTACAAGATATGCTGAAAGGATTAGTATCTGCTTATCCAAACAGTTTCAAACAGGTGCCAAATACAACAGTAATTGTGAGGAAGGATGCTCCGACAACTGGAAAAGTTGGTTTGGTTAGTGGTGGAGGCAGTGGACATGAGCCTGCCCATGCAGGTTATGTTGGAAAAGGGATGTTAGATGCAGCGGTGTGTGGGGAAGTATTTACTTCACCGACTCCTGATCAAGTTTATGAAGCGATTAAAGCAGTAGATGGTGGTGCTGGTGTATTTTTAATCATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGTATGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 44641-43945 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQX01000028.1 Bacillus methanolicus strain DE0196 NODE_32_length_52396_cov_40.750502, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 44640 32 100.0 33 ................................ ACCGATCATGATTTAGCTGCTCTCACTTACTTT 44575 32 100.0 33 ................................ AGAAGAAAACACGCTAATTTACCGAGGGTCAAG 44510 32 100.0 35 ................................ CTCTAGGCGAAGATTTACTTGATAATCTAATTCAT 44443 32 100.0 35 ................................ TCGGAAGATCCGGAGCGAATTAAGTCGCTATACCT 44376 32 100.0 34 ................................ ATCATGACGCGTTGCTCATGCAAGTGCTGTACAA 44310 32 100.0 34 ................................ GTACCAAGTCCTACAGGCTCACCCAAGTAAATAT 44244 32 100.0 34 ................................ TTTTCCGAGATTAATTGCGTAAAAAGGGTCTGCT 44178 32 100.0 34 ................................ CCATGCTACTGGATTGGCGTCTGTTCCTTATGAT 44112 32 100.0 39 ................................ GAGACTTTTAGAACGATTGGATAGAGGATGACGAAAAAT 44041 32 96.9 33 ...............G................ CGGATTTATGACGAGAGCAGGATTTACAACATC 43976 32 96.9 0 ......................A......... | ========== ====== ====== ====== ================================ ======================================= ================== 11 32 99.4 34 GTCACACTCTATATGAGTGTGTGGATTGAAAT # Left flank : CAGATATTAGCAAATAAGACAGTTGCAATCTTCATGATTTCTAAATGCGAGCAAGCAAAGTCAAGATTGCAATTATAACAAACGAAAGTGGAACAGAGAATCCCTCTGCTATTCGCTATTCCAAGGTAGCCTAAACAGAAAAACTCAGCATATTCTGGTGTAAATTCGATTTACTTATAATATAACTGCTACCTGAAACCCTTATTATTATCTGATATAATGTTAAAAAAGGATTTGTTTTCTCAATCCTCACTTCTTTACCTAATAACAGCTAAACTTTTTACATAAAGAGTTTTTATATTAAAACACTTAGAATAAACTGTAATAATTCAGTGCGAATGTGAAGCGCACATGATTTTCCTAGGGGATTCGCACCTTGAAAATAGCAACTATTCCTCTTACCGGCATTATCCTATTCCATTTTTTGCCCATAAGGCCACAAAATGGCTTTTATCACACGACAATAAGTGTAATTTTACTTTTTTTGTTTAAAAATCGCT # Right flank : ACTTCCTGCAAAAAAAAGATAAGCGGGTATCCAAAAAATATTGGACACCCGCTTATCTTTTTAATTTAATTGCATGGTAGTTATACAAGTCCCATCATTCTCAAAAGTGGATAGCTCGGATTCGACTGTCTTGCCATCGTAAGAAATCGTAACAGTGTACGTTTTTTCCCGTGGAAGCCATAAATCAAAAAATCCATTTGGAAGGGACGTTATTTTTTCATCTATCATCACTTTTCCATCTTCGTCTTCAATATAGACATCAAATTCTTTTTCGACCAGTTCTCCTTGACAACCTGTCAAGCTATGATTTGTTCAAGGATGGGTCTCATGAATATATGGAGCGATCGATACAAAAAACTCCTCTTCCGGTAGCTCATACACTGTCTCTTCATCAGTTTCTTCATTCGTGACAATTAATTGTGTAGCAGTAATAGAGGCCGTTTCACCTTCAACACTTCCAGTACTGTACTCATTCACCAATTTTTTAATGTCTACCGAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCTATATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32852-33757 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQX01000032.1 Bacillus methanolicus strain DE0196 NODE_36_length_49331_cov_42.457396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 32852 33 100.0 36 ................................. GTTGTAAATCACACGTAAATCACTTGCTACTTGATC 32921 33 100.0 35 ................................. TTTAATTTACGGACGTAAATACGCAGGTTCACCAT 32989 33 100.0 34 ................................. CGTCTGACTCGCGCGCGCTGGCGAATTTGCTGCC 33056 33 100.0 34 ................................. ATGTATATTTTTGTAGACTTTTATAGGAAAATGT 33123 33 100.0 35 ................................. CTTTTAGTATACCTTGGGATGTATATAGAGCGTTT 33191 33 100.0 35 ................................. CATAGCTTCGTCTCTTGTGAGTATAGGTGGAAGGT 33259 33 100.0 33 ................................. ATCCATTGTTGCTACCGTTTGAACATCGATAAC 33325 33 100.0 34 ................................. ATATCTTCCCTGCGGGGACAGACACTTTGGAAAC 33392 33 100.0 33 ................................. CGTTATTCCCTTTTTCTTATTTTTGAAAGGTAA 33458 33 100.0 32 ................................. ATTATACCTAAAACAAAGAAACCGAATAATAC 33523 33 100.0 36 ................................. ATTTAATAACTCAATGTTCTCATATGTGTTACCAAT 33592 33 100.0 34 ................................. TTCTAGAACAGCGTTTCTTGTAGATGCGTTACTA 33659 33 100.0 33 ................................. ATCATCTCTTGTTGCTCCGCGATAAGTATTCGG 33725 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 100.0 34 GTCACACTCTGTATGGAGTGTGTGGATTGAAAT # Left flank : TACTCAAATCTGTTCTCTTTCGCAAAGGAAATCGTGTTTCATCATTGGGAACAATGTGATGCAGAGCGTTACGCCAATATTGCTCTTAGCCAAGGTGGCTTACAAACTGGCTTAAAATTAAGAGTTCATGAGATTGAAGAGGCATTTGCAGAATTTCGTAATCATGTGAAAGAGGTTTTCGCAGGTGAAATAAAAGAGATTCTCTTCAGTTATCGGATGAGGTTAGGGATAAAAAAATAGTAATAATTTGGCTATACTTTATAAACTGAATTTAAAAAGCTTGCTTCTAAATAATATTTGGTGCGAACCATAAGTGAACATAAATTCTCTGGGGGATTCGCACCAGTTGAATAAATCCTTAAAAAAGCTGATGCGACAACAGAATCGTTCCAAAAAATTTTCGGACAACCGTAAGTATCTTATAAAATTTCCTTGCCCCATGGAGATTCGCACTTTTTAGTATACGAAGCGTTGATATAAAAGGGCGCATAACCGGCGCT # Right flank : TAGTGTCAAGATTCCAGTAATTCATTGACTCAAAGAATGGGTCTCATTTATAATAAAAATAGGTAATATATTACCTATTTTGAGGGTGTCGTTGATGAAAAGAGAAATATCGTTCACTTTTATTTGTATTTTGCTTATTGCTGGCTGCCAACTTAAAGGTTACAAAGCAACAAAATTTATTAAAACTGCTGAAGATAATCGTCATCTTATTACTATTGGTTTATTCGAGGGAAGGTATGAAGGAACGCTATCAGTAAACGATTCTGACAATCTTCTAGTAGCAGGGACAGTTGAATCAGGTGATATCACTCTTCAGTTATTTAGGTCGAAAGGTGAAGAGCCTATTTTAGTCGCACAAGTTACTTCAGAAGACGGTTTAGAAACGGAAATTAATGAAAGATTTCCTACTGGAGAATATAAGTACATAATTCAATCAAAGCAAGCAAGAGAAGTAAGCATTGCTCTTGTTTTTGAAAAGAAGGAGCAGTATGCATGGACGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCTGTATGGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //