Array 1 96617-96466 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZP01000003.1 Escherichia coli strain MOD1-EC6330 MOD1-EC6330_3_length_233268_cov_32.9089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96616 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 96555 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 96494 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113977-112118 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZP01000003.1 Escherichia coli strain MOD1-EC6330 MOD1-EC6330_3_length_233268_cov_32.9089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113976 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 113915 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 113854 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 113793 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 113732 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 113671 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 113610 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 113549 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 113488 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 113427 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 113366 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 113305 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 113244 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 113183 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 113122 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 113061 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 113000 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 112939 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112878 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112817 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112756 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112695 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112634 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112573 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112512 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 112451 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 112390 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 112329 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 112268 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 112207 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 112146 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //