Array 1 10375-11324 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFC02000010.1 Ralstonia solanacearum strain UTT-25 Seq_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10375 29 100.0 32 ............................. GCCGCCGAGGACAACGTCATCACCGAGGCGGA 10436 29 100.0 32 ............................. GTGGCGCCGAGGCGCTCGAATGCCAGTTCGAC 10497 29 100.0 32 ............................. ACCAACATGGGCGGCACGTTCCTGTCGACCAA 10558 29 100.0 33 ............................. GCCGAAATCGTCCGCATGGGCGACACACCTGGC 10620 29 100.0 33 ............................. GCCGAAATCGTCCGCATGGGCGACACACATGGC 10682 29 100.0 32 ............................. GAACAGCGGCGCGAAATATGGGATTTAGCGTT 10743 29 100.0 32 ............................. CGCGGCGCCACCACAGCAAGGAGGCCGCATGA 10804 29 100.0 32 ............................. ACCATGGTGCCGTTGAGCATGATCGAGGCCCA 10865 29 100.0 32 ............................. TCGACTGCAACGCAGGTCTCGATTGTCCCACG 10926 29 100.0 32 ............................. GCGTGATCCGCCATGTCAGCGCGGACGAGGCG 10987 29 100.0 32 ............................. GGATGCCAACGGTGTTGCAATACGGGCTTTTT 11048 29 100.0 32 ............................. CACGCTCGCGCCACCCCATGCCCGCCTTGAAT 11109 29 100.0 33 ............................. CCGACACACATCCGTTTCCCGGTAACACCTCTA 11171 29 100.0 32 ............................. AACTCGATTGAGGCGTACGGCGCCTCAGGCAA 11232 29 93.1 32 ............CA............... CCCATGATCTGAAACAGGCCCCAGCTCGCCGA 11293 29 86.2 0 ............CA..........T...A | A,TC [11316,11318] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.7 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTTGATTGCGTGCGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : AACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAATCAAAATAAATACCCGCAAGACTGCTACGATCCCCTGCTCGGGAGCAGGCACAGATTGTCAAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGGGTTGCGATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGTTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20687-21632 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFC02000010.1 Ralstonia solanacearum strain UTT-25 Seq_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20687 29 100.0 32 ............................. GCATGAGGATCGAACCGGACCGCTCGCCTGAC 20748 29 100.0 32 ............................. CATTCCGATTGCGCTAGAGAGTTCGTGCGGGA 20809 29 100.0 32 ............................. CGCGACGCGCTGCCCATACGTCTGACACGGGA 20870 29 100.0 32 ............................. TGCACAACGCTCCTCCGGGGACGCGAGCAACA 20931 29 96.6 32 ............................A GCAACTCAGTTGTTTGCACGTTTTCCCCTCAC 20992 29 100.0 32 ............................. GTCAGCATCACCCGGGAGGCAGGCGACACGCA 21053 29 96.6 32 ............................A CAAGCACTCGACGTTCAGCGCTGCGGTGTGCC 21114 29 100.0 32 ............................. ATCAATGAGGCCGTCCTAGATGAAATTAGGCA 21175 29 100.0 32 ............................. TGATCGAGGTGCTGGTGGCGCCGATGAAGGCC 21236 29 100.0 32 ............................. GCTGGGTTCTTTGTGCTGTTCCAATTGCCATC 21297 29 100.0 32 ............................. TCGAGCGTCAGAAAACCAGCGCTCGCGGTCAG 21358 29 100.0 32 ............................. CCGCGCGAGGTGTGGGCGGCCGAGTTCCGCGA 21419 29 100.0 32 ............................. ACCCGCAAGACGCTCACGGCGGACCAGAAAAG 21480 29 96.6 33 .................A........... GGGGATGCGCGGCGTCTGTTTGTGCGGTTGGCC 21542 29 86.2 32 A.......T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 21603 29 86.2 0 ............C..........ACC... | T [21617] ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.6 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATCCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGCGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : GCCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAACGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 498-833 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFC02000873.1 Ralstonia solanacearum strain UTT-25 Seq_873, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 498 29 100.0 32 ............................. GCCGCCGAGGACAACGTCATCACCGAGGCGGA 559 29 100.0 32 ............................. GTGGCGCCGAGGCGCTCGAATGCCAGTTCGAC 620 29 100.0 32 ............................. ACCAACATGGGCGGCACGTTCCTGTCGACCAA 681 29 100.0 33 ............................. GCCGAAATCGTCCGCATGGGCGACACACCTGGC 743 29 100.0 33 ............................. GCCGAAATCGTCCGCATGGGCGACACACCTGGC 805 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 33 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : GCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTTGATTGCGTGCGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGTG # Right flank : GCCGAAATCGTCCGCATGGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //