Array 1 103638-105323 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRX01000035.1 Streptococcus iniae strain QMA0140 NODE_1_length_129206_cov_107.887_ID_3266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 103638 36 100.0 30 .................................... AATCGACGCCGAGGGAGATGTCTACATTAG 103704 36 100.0 30 .................................... CGTAGCTACTCGGGCCATTTCGATAATCCA 103770 36 100.0 30 .................................... AGCTTATTGATAAGTATAAAAGCAAGGTCA 103836 36 100.0 30 .................................... TTGATTTGAAATATTCGTTAGCAAATTCAT 103902 36 100.0 30 .................................... TGAAACATATTTAGAGCATCACGGTATTAA 103968 36 100.0 30 .................................... AATGATGTTTACATCATAGTAGAAGATTAC 104034 36 100.0 30 .................................... TGGTACTAAATCTCTTGTAGAAGGTCTTTC 104100 36 100.0 30 .................................... TACTCCGACCAATATAACTAATAATCCAAT 104166 36 100.0 30 .................................... TATGATTGTTGTGCTAACGCCTTTGGCACA 104232 36 100.0 30 .................................... TAATTGATATGTAGAATAGTCTTCTCTCTT 104298 36 100.0 30 .................................... CCTAAATCCCAATCTTGCAATGTCCTTGCT 104364 36 100.0 30 .................................... TACTATGAACTGGATAAACCTATATGCATT 104430 36 100.0 30 .................................... GCTCAGGAACTGACTTGAGCGAAGAAGACA 104496 36 100.0 30 .................................... GTTTGATGATGTTGTCTATACAAATACTGA 104562 36 100.0 30 .................................... TTTGATACGATCTATGTCAGCGAGCATTTG 104628 36 100.0 30 .................................... GTTTTAGCTTTTTTAAATTCTTCTTGCTTC 104694 36 100.0 30 .................................... GTGGCATTTTTGGAAATAGTTAGACAATTA 104760 36 100.0 30 .................................... TATAATTTTTCAGATGTCTTTTTGATTCTA 104826 36 100.0 30 .................................... AGGTGTCAAACTTATCACAGCTCTTGTTCA 104892 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 104958 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 105024 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 105090 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 105156 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 105222 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 105288 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 98.9 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //