Array 1 200681-201137 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMZ01000001.1 Cronobacter malonaticus strain cro864B2-3 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200681 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 200742 29 100.0 32 ............................. TCACACCCAGTCACGTTAAATATCCAGTATTA 200803 29 96.6 32 ............................C GGCTCAACTCTTCCTGAGTTCTGGCATCGTTG 200864 29 100.0 32 ............................. CCTGTCAGTTCACCGTATAGAAAGCGAGATGC 200925 29 100.0 32 ............................. GGAAATCCGACGTTACGCTATCCAGCTTCGCC 200986 29 100.0 32 ............................. GTAGAACCGGGTGCCGCGCAGCCCGGCGACGT 201047 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 201108 29 93.1 0 ...........TT................ | G [201125] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAATGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 222838-224209 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMZ01000001.1 Cronobacter malonaticus strain cro864B2-3 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 222838 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 222899 29 100.0 32 ............................. TTGGTTAACGCAAACGCAGATCCTGATAACAA 222960 29 100.0 32 ............................. GCCAAAAATCTGATCCCCTTTTGCTCTAGCCA 223021 29 100.0 32 ............................. GTAAATGCACCAACCAGGTAATAATATTTGCT 223082 29 100.0 32 ............................. CCGGGGTGGGGAATATTATTTAGCGCGACAAT 223143 29 100.0 32 ............................. GCCGGTCACAGGGTTGTCGGAGTTCCTGAACA 223204 29 100.0 32 ............................. GGCGCGCGGTACCGGCACAGGAGGTTGACCAC 223265 29 100.0 32 ............................. TCAGCCGGCACCAGACGCAGCGTCAGGTTACA 223326 29 100.0 32 ............................. ACGGATGAAGTCGGGAAGGGTCAGGTCCGCAT 223387 29 100.0 32 ............................. CGAGAGCAATAGTGAATGGGTGCCCGGTCATC 223448 29 100.0 32 ............................. AACTGTGAGATTACGCCGTACCTTTACCGTGC 223509 29 100.0 33 ............................. CACCAGCAGCTCCCCGGCGGCTTTTCGCCCTAC 223571 29 100.0 32 ............................. AACGCTACGCCGCCGCCGCTGAGGCGGCAGGG 223632 29 100.0 32 ............................. GACGGGCGAGAGCGCCAGAAATCTTCGCGCCA 223693 29 100.0 32 ............................. CGCGCGAATCCGGCCCAGGTCTTGTTCTGCCA 223754 29 100.0 32 ............................. TGTTCTGGACTTGCGACGAGCACAAAACTGAC 223815 29 100.0 32 ............................. GCCGATATCTCTGATTGTTACTCGTCGCTGAA 223876 29 100.0 32 ............................. AGGGCGGCGGGCTTGATAATATCGCAGAGGCC 223937 29 100.0 32 ............................. ATTTCGATAAATAGAGAAGGGGTGTAATTCAT 223998 29 100.0 32 ............................. ATAATTTAGCAAGCCGGAGTTCAGCGCCGGCC 224059 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACGGGCAAATC 224120 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATCAGGAGAGAAG 224181 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTTCAGCTTCATCCTGGTGATGAAACATCATAAGTGGCGTATCAACTCGTCCTGGATACGAGCGGCCTTTGGCTGCTAATTTCAGGTGCAGTTATTTACTATAACGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //